Browse Element(s) Details


OsAffx.16726.1.S1_at

Description tigr:9635.m04602
TID=OsAffx.16726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4579010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45740OsAffx.14221.1.S1_x_at5/117+27306234..27307832hypothetical protein
LOC_Os07g45750OsAffx.30966.3.A1_x_at11/117+27308024..27314863AT hook motif-containing protein, putative, expressed
LOC_Os07g45760OsAffx.30966.4.S1_at1/117+27316342..27319173hypothetical protein
LOC_Os07g45760OsAffx.30966.4.S1_x_at1/117+27316342..27319173hypothetical protein
LOC_Os07g45770Os.2987.3.S1_x_at1/117+27323005..27324904retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45780OsAffx.28924.1.S1_at11/117+27328621..27331805expressed protein
LOC_Os07g45790OsAffx.16726.1.S1_at10/117+27332547..27334517expressed protein
LOC_Os07g45800NANA7+27335904..27336224hypothetical protein
LOC_Os07g45810NANA7+27340664..27342422hypothetical protein
LOC_Os07g45820NANA7+27343089..27344438retrotransposon protein, putative, unclassified
LOC_Os07g45830NANA7+27347671..27354767retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45840NANA7+27356694..27357119retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45850OsAffx.31869.1.S1_at7/117+27358224..27359339retrotransposon protein, putative, unclassified
LOC_Os07g45850OsAffx.31869.5.S1_x_at4/117+27358224..27359339retrotransposon protein, putative, unclassified
LOC_Os07g45850OsAffx.31869.3.S1_x_at4/117+27358224..27359339retrotransposon protein, putative, unclassified
LOC_Os07g45850OsAffx.31869.3.S1_at3/117+27358224..27359339retrotransposon protein, putative, unclassified
LOC_Os07g45850OsAffx.31869.3.S1_s_at2/117+27358224..27359339retrotransposon protein, putative, unclassified
LOC_Os07g45850OsAffx.31869.2.S1_at1/117+27358224..27359339retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16726.1.S1_at--22--9211Chr07:27334448..27334472 (25 bp)
TGCCAGGCTGCTAGGCGCGACGGTG
LOC_Os07g45790
OsAffx.16726.1.S1_at--218--1931Chr07:27334429..27334453 (25 bp)
ACGGTGCTGGCTGGGCGACGATCTC
LOC_Os07g45790
OsAffx.16726.1.S1_at--508--6411Chr07:27334410..27334434 (25 bp)
GATCTCCGGCGGGCAACCAAAGCAG
LOC_Os07g45790
OsAffx.16726.1.S1_at--808--1671Chr07:27334387..27334411 (25 bp)
AGCCGACAAGGCGACCAGCTAGGCG
LOC_Os07g45790
OsAffx.16726.1.S1_at--46--5611Chr07:27334383..27334407 (25 bp)
GACAAGGCGACCAGCTAGGCGCGAC
LOC_Os07g45790
OsAffx.16726.1.S1_at--1130--971Chr07:27334334..27334358 (25 bp)
AGGATCTTCGGTGGAGACGAGCAGC
LOC_Os07g45790
OsAffx.16726.1.S1_at--773--5771Chr07:27334319..27334343 (25 bp)
GACGAGCAGCCGACATACGTGGCGA
LOC_Os07g45790
OsAffx.16726.1.S1_at--312--871Chr07:27334271..27334295 (25 bp)
AGGCCATTCCTCAAACAGGTCCCGA
LOC_Os07g45790
OsAffx.16726.1.S1_at--1112--9231NONE
TCCTCTTGGCAAGGGAGTTTCTAGG
NONE
OsAffx.16726.1.S1_at--781--6591Chr07:27332751..27332775 (25 bp)
GATTGAGACGGCAGGTTGTCACTTG
LOC_Os07g45790
OsAffx.16726.1.S1_at--484--5991Chr07:27332747..27332771 (25 bp)
GAGACGGCAGGTTGTCACTTGTCAG
LOC_Os07g45790
Target Sequence 
TGCCAGGCTGCTAGGCGCGACGGTGCTGGCTGGGCGACGATCTCCGGCGGGCAACCAAAGCAGCCGACAAGGCGACCAGC
TAGGCGCGACGGCACCAGGCGGGGGCGGCGGGCGAGGATCTTCGGTGGAGACGAGCAGCCGACATACGTGGCGAGGGCGA
GCCGGCGAATCCCCTCCAGGCCATTCCTCAAACAGGTCCCGATCCGATCACCCTTTTGCCTCATCTCTTCCTCCGTGCCC
CCTCTCCTCTTGGCAAGGGAGTTTCTAGGTTGGATTGAGACGGCAGGTTGTCACTTGTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis