Browse Element(s) Details


OsAffx.28946.1.S1_at

Description tigr:9635.m04804
TID=OsAffx.28946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4766011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47590Os.26799.1.A1_at11/117+28451029..28454858heavy metal-induced putative protein 1, putative, expressed
LOC_Os07g47610OsAffx.29789.3.S1_x_at11/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.29789.1.S1_x_at7/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.31885.2.S1_x_at2/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47620Os.53572.1.S1_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47620Os.8188.1.S1_s_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os07g47640Os.10370.2.S1_x_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47640Os.10370.2.S1_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47650Os.53309.1.S1_at11/117+28474728..28478010Kelch motif family protein, expressed
LOC_Os07g47660OsAffx.28946.1.S1_at11/117+28478221..28478839expressed protein
LOC_Os07g47670Os.20501.1.S1_at11/117+28482570..28483508Hypoxia induced protein conserved region containing protein, expressed
LOC_Os07g47680NANA7+28484201..28484977transposon protein, putative, Pong sub-class
LOC_Os07g47690OsAffx.16753.1.S1_at11/117+28487115..28487633hypothetical protein
LOC_Os07g47700Os.7085.2.S1_x_at11/117+28493024..28496411NAD-dependent epimerase/dehydratase family protein, putative, expressed
LOC_Os07g47710Os.48988.1.S1_at8/117+28499227..2850069860S ribosomal protein L22-2, putative, expressed
LOC_Os07g47720Os.56867.1.S1_at11/117+28501369..28503801pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28946.1.S1_at--74--4671Chr07:28478764..28478788 (25 bp)
GCGGAGGATTATTACGGGCCGTACT
LOC_Os07g47660
OsAffx.28946.1.S1_at--437--6431Chr07:28478618..28478642 (25 bp)
GATCACCGCGGCCTTGACCGACATG
LOC_Os07g47660
OsAffx.28946.1.S1_at--138--9131Chr07:28478427..28478451 (25 bp)
TGCTGTTCCTCGTACTGATGATGGT
LOC_Os07g47660
OsAffx.28946.1.S1_at--844--8851Chr07:28478412..28478436 (25 bp)
TGATGATGGTTTACTACCGGCCGTC
LOC_Os07g47660
OsAffx.28946.1.S1_at--395--8651Chr07:28478409..28478433 (25 bp)
TGATGGTTTACTACCGGCCGTCGTG
LOC_Os07g47660
OsAffx.28946.1.S1_at--77--3471Chr07:28478329..28478353 (25 bp)
CAGTGAGAAGTGTTGCATCGGCCGC
LOC_Os07g47660
OsAffx.28946.1.S1_at--1061--1452Chr08:14206257..14206276 (20 bp)
AGAAGTGTTGCATCGGCCGCCTCGG
NONE
OsAffx.28946.1.S1_at--458--9451Chr07:28478303..28478327 (25 bp)
TCGGCGACCTGAAGCTTCGACTTAG
LOC_Os07g47660
OsAffx.28946.1.S1_at--701--5391Chr07:28478293..28478317 (25 bp)
GAAGCTTCGACTTAGTCTTCGTGAA
LOC_Os07g47660
OsAffx.28946.1.S1_at--240--10071Chr07:28478281..28478305 (25 bp)
TAGTCTTCGTGAAATCAGTTTTAAA
LOC_Os07g47660
OsAffx.28946.1.S1_at--704--731Chr07:28478251..28478275 (25 bp)
ATGTAAATTAATTTCCTTATGTCCT
LOC_Os07g47660
Target Sequence 
GCGGAGGATTATTACGGGCCGTACTACCACGGCGGCGGCCGGCACGGCGGTGGCGGCGGGCCGCCGCACGCGCTGCTGCT
GATGGCGGTGGTGCTGGCGCTGGCGGTCGCGGGGCCGCGGGTGCTCGGCGAGGGCGCCGGGGAGGCGATCACCGCGGCCT
TGACCGACATGCTCAGCCCCGTGGGGCTCCTGCTGCTTCCCGTCAGCCTCGTCTTCGTCATCCGCATCCTCTCCGACGAC
CGCAGCGCCGCCGTGCTCGCCAACGTCCTCGCCTTCGGCGCCGGCGCGCCCGACGCCGTCCACCGCGTCGGGGGTTCGCC
GGTGGGGGTCGTGGTCGTGCTGTTCCTCGTACTGATGATGGTTTACTACCGGCCGTCGTGGCTGCTCCGCGGCGGCGCCG
GCGCCGGCGGCGAGGGCGACGGCGAGTAGCTGTAGCAGTGAGAAGTGTTGCATCGGCCGCCTCGGCGACCTGAAGCTTCG
ACTTAGTCTTCGTGAAATCAGTTTTAAAAGAAAATGTAAATTAATTTCCTTATGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis