Browse Element(s) Details


OsAffx.28950.1.S1_at

Description tigr:9635.m04853
TID=OsAffx.28950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4812011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48090Os.17787.1.S1_at6/117+28709056..28710778Protein kinase domain containing protein, expressed
LOC_Os07g48100Os.4627.1.S1_x_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48100Os.4627.2.S1_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48110Os.56227.1.S1_s_at11/117+28730154..28730624expressed protein
LOC_Os07g48120OsAffx.28950.1.S1_at11/117+28733548..28737411hypothetical protein
LOC_Os07g48130Os.13483.1.S1_at11/117+28739827..28744207Potassium transporter 2, putative, expressed
LOC_Os07g48140OsAffx.16760.1.S1_at11/117+28750986..28751615hypothetical protein
LOC_Os07g48150Os.54703.1.S1_at11/117+28757768..28759028uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28950.1.S1_at--345--3431Chr07:28737313..28737337 (25 bp)
CAGAGAGCCTGTTCCGTTCGAGAAG
LOC_Os07g48120
OsAffx.28950.1.S1_at--1063--10671Chr07:28737151..28737175 (25 bp)
TTCCTTTGCCAAGTGATGCCGGGAG
LOC_Os07g48120
OsAffx.28950.1.S1_at--571--8331Chr07:28737103..28737127 (25 bp)
GGCTGCCACTCGCAAGGCTGAGAAC
LOC_Os07g48120
OsAffx.28950.1.S1_at--51--10431Chr07:28734226..28734247 (22 bp)
TTAAGGGTCAGTCTCAACTTGCCAC
LOC_Os07g48120
OsAffx.28950.1.S1_at--857--8391Chr07:28733777..28734187 (25 bp)
GGCCCACGGTTGGACCTACTAATTG
LOC_Os07g48120
OsAffx.28950.1.S1_at--266--8691Chr07:28733754..28733778 (25 bp)
TGTGCAATCAGTGTACCATTCGCTT
LOC_Os07g48120
OsAffx.28950.1.S1_at--2--9971Chr07:28733741..28733765 (25 bp)
TACCATTCGCTTTGGCCCTGATTAA
LOC_Os07g48120
OsAffx.28950.1.S1_at--1064--2291Chr07:28733707..28733731 (25 bp)
AAATGGATCAACCTACAGCCCGGGA
LOC_Os07g48120
OsAffx.28950.1.S1_at--488--2711Chr07:28733673..28733697 (25 bp)
AAGCATCATGCATTTCCAGGAACCG
LOC_Os07g48120
OsAffx.28950.1.S1_at--593--4231Chr07:28733651..28733675 (25 bp)
CCGATTATTCGGATTCAGATGCCTC
LOC_Os07g48120
OsAffx.28950.1.S1_at--568--571Chr07:28733633..28733657 (25 bp)
ATGCCTCTAAGGTTCGAAAAGCCAT
LOC_Os07g48120
Target Sequence 
CAGAGAGCCTGTTCCGTTCGAGAAGGAGAGGGAGGCAAGGGGCCGCCAGAGCGCCGACGCGGGAGGGCCCCAAGTTCCTT
TGCCAAGTGATGCCGGGAGGAGGACGCTAAGAAGCATGCCGAGGCTGCCACTCGCAAGGCTGAGAACCGTCGCCTCCGCC
TCCGCCTTCGTGTCGTCCAAGATGGCCTCCTGTGTCGGCGCCCTGCTGGCGTCCAAGGTGAAAGCACCACGAAGGGACTG
GTTTAATTTGTCTGGTGGTTCTGGATATGAACAAGTTAAGGGTCAGTCTCAACTTGCCACTCAAGAAGGGTACAGGTGTC
GAGCTGCAGTAGGAAAAGGGCCCACGGTTGGACCTACTAATTGTGCAATCAGTGTACCATTCGCTTTGGCCCTGATTAAT
CACAGGACAAATGGATCAACCTACAGCCCGGGAGAAAGCAGAAAGCATCATGCATTTCCAGGAACCGATTATTCGGATTC
AGATGCCTCTAAGGTTCGAAAAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis