Browse Element(s) Details


OsAffx.28971.1.S1_at

Description tigr:9636.m00020
TID=OsAffx.28971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0120011/11hypothetical protein
LOC_Os06g513401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g328141/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01180Os.11033.1.S1_at11/118+108885..114704Nicalin precursor, putative, expressed
LOC_Os08g01190OsAffx.16772.1.S1_at11/118+132109..132924uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os08g01200OsAffx.28971.1.S1_at11/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.28971.2.S1_x_at8/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.29536.5.S1_x_at1/118+135650..137878hypothetical protein
LOC_Os08g01210OsAffx.5674.1.S1_at11/118+141542..142108Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01220Os.9488.1.S1_at11/118+145561..147105Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01230NANA8+148536..150233hypothetical protein
LOC_Os08g01240Os.39278.1.A1_at11/118+152768..153560expressed protein
LOC_Os08g01240Os.247.1.S1_at1/118+152768..153560expressed protein
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0006827biological_processhigh affinity iron ion transport
GO:0006878biological_processcopper ion homeostasis
GO:0007568biological_processaging
GO:0016021cellular_componentintegral to membrane
GO:0005215molecular_functiontransporter activity
GO:0016531molecular_functioncopper chaperone activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28971.1.S1_at--961--3395Chr08:28232854..28232878 (25 bp)
CAGTGACACCGGCAGTGGTCGGGAA
NONE
OsAffx.28971.1.S1_at--1028--2791Chr08:135856..135880 (25 bp)
AATGATTTGGATGAGAAACGATTCT
LOC_Os08g01200
OsAffx.28971.1.S1_at--1014--5532Chr10:20243386..20243406 (21 bp)
GAAACGATTCTCTCGAAATCGGGAG
NONE
OsAffx.28971.1.S1_at--1009--1419Chr10:20243405..20243429 (25 bp)
AGAAAGATTTGGCAACGAGTTCAAG
NONE
OsAffx.28971.1.S1_at--696--2871Chr08:135793..135817 (25 bp)
AAGGGAGAGAGTGACTTCCGGAATT
LOC_Os08g01200
OsAffx.28971.1.S1_at--1119--6011Chr08:135785..135809 (25 bp)
GAGTGACTTCCGGAATTGGGATTTG
LOC_Os08g01200
OsAffx.28971.1.S1_at--820--4255Chr06:29834592..29834661 (25 bp)
CCGGAATTGGGATTTGGATCTAAAT
NONE
OsAffx.28971.1.S1_at--1068--7951Chr08:135761..135785 (25 bp)
GGATCTAAATTTTGATACTTGTACA
LOC_Os08g01200
OsAffx.28971.1.S1_at--379--87517Chr10:20243523..20243547 (25 bp)
TGTACACAAGGGTTCAAGGAGACGA
NONE
OsAffx.28971.1.S1_at--178--3958Chr10:20243561..20243585 (25 bp)
GTGGGAGTTTGATACTTTCGGGAAT
NONE
OsAffx.28971.1.S1_at--530--6438Chr10:20243571..20243595 (25 bp)
GATACTTTCGGGAATGGGAACAATT
NONE
Target Sequence 
CAGTGACACCGGCAGTGGTCGGGAAAGGGAAAAGAAGGGTAAAAAAGGGGCTTGGTCCCTTGCCATAATGAGGAGAGGGA
GAGTGAGGAGGAGGAGGAGAGGGAGAGCAGCTGCTTCTCCCACTCTTGGACGGGTGCGGCGTGGGGTGGCGGGGGGGCCA
TGGATGACGTCGGCGATGATGGCGGCGGTCGGTTTGTCATGGAGCGGGGGCAAGGCGGTCGCACGTGGCGTCGGCGGCGC
GAGGACTGATGGCGGCGGCGTTCGGCCGGGTTTAGGGATGTATCAAGGGAAACTCAAGGAGAAGTCATGGAAAAGATACA
AAAGGAATACTTGGGTATTTGTTCTCGGGAATATAAGGTGGAGTCAAGGAAATGATTTGGATGAGAAACGATTCTCTCGA
AATCGGGAGAAAGATTTGGCAACGAGTTCAAGGAAGGGAGAGAGTGACTTCCGGAATTGGGATTTGGATCTAAATTTTGA
TACTTGTACACAAGGGTTCAAGGAGACGAGTAAGGAAACAAAGTGGGAGTTTGATACTTTCGGGAATGGGAACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis