Browse Element(s) Details


OsAffx.28992.1.S1_at

Description tigr:9636.m00157
TID=OsAffx.28992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0258010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02530NANA8+1039364..1039672Auxin responsive protein
LOC_Os08g02540Os.56279.1.S1_at11/118+1040592..1043634Adenylate kinase family protein, expressed
LOC_Os08g02550Os.33735.1.S1_at11/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_x_at10/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02550OsAffx.5683.1.S1_at4/118+1044292..1048751COP9 signalosome complex subunit 3, putative, expressed
LOC_Os08g02560OsAffx.16793.1.S1_at11/118+1050028..1053386hypothetical protein
LOC_Os08g02570OsAffx.28991.1.S1_at11/118+1055977..1059449hypothetical protein
LOC_Os08g02580OsAffx.28992.1.S1_at10/118+1062365..1065127hypothetical protein
LOC_Os08g02590OsAffx.28993.1.S1_at11/118+1067826..1068158expressed protein
LOC_Os08g02600OsAffx.5684.1.S1_at11/118+1068948..1069730expressed protein
LOC_Os08g02610NANA8+1075664..1076215hypothetical protein
LOC_Os08g02620OsAffx.5685.1.S1_at11/118+1077800..1080313hypothetical protein
LOC_Os08g02630Os.51086.1.S1_x_at11/118+1083391..1084388expressed protein
LOC_Os08g02640Os.5499.3.S1_a_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.2.S1_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.4.S1_x_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28992.1.S1_at--1155--7471Chr08:1063041..1063217 (25 bp)
GTGTGGTCAAGCTTCAGATTGCATT
LOC_Os08g02580
OsAffx.28992.1.S1_at--899--8471Chr08:1063226..1063250 (25 bp)
TGGCTGCGGCGAAGTCGTTCCAGAA
LOC_Os08g02580
OsAffx.28992.1.S1_at--894--911Chr08:1063281..1063305 (25 bp)
AGGCTCTAGCCGACGTTGGTACAAG
LOC_Os08g02580
OsAffx.28992.1.S1_at--771--1211NONE
AGTTCATACTGAGCGATCTGTTCAA
NONE
OsAffx.28992.1.S1_at--1081--5631Chr08:1064411..1064435 (25 bp)
GACAGCGACTCTTGGAATGGTCATT
LOC_Os08g02580
OsAffx.28992.1.S1_at--220--6771Chr08:1064717..1064741 (25 bp)
GTTAACCATTCTTGTTGCTACGGAT
LOC_Os08g02580
OsAffx.28992.1.S1_at--11--7951Chr08:1064750..1064774 (25 bp)
GGATTTCCCCAAATTGATCACAAAC
LOC_Os08g02580
OsAffx.28992.1.S1_at--936--3671Chr08:1064794..1064818 (25 bp)
CTTTGACAAAGCTCTACTCTACACC
LOC_Os08g02580
OsAffx.28992.1.S1_at--834--9871Chr08:1064808..1064832 (25 bp)
TACTCTACACCCGAAACAGGTCTTG
LOC_Os08g02580
OsAffx.28992.1.S1_at--778--3471Chr08:1064824..1065042 (25 bp)
CAGGTCTTGAGGGTATTCACGTTTT
LOC_Os08g02580
OsAffx.28992.1.S1_at--755--6871Chr08:1065030..1065054 (25 bp)
GTATTCACGTTTTATGGGCACCTCA
LOC_Os08g02580
Target Sequence 
GTGTGGTCAAGCTTCAGATTGCATTGGGTGGTGTGGCTGCGGCGAAGTCGTTCCAGAAGGATCTGAACCGGATTGCTGAG
AGGGTGCAAGGCTCTAGCCGACGTTGGTACAAGTTCATACTGAGCGATCTGTTCAAGAAGTACTACTATCAAGTAATAGC
ATTTTTTGCAGAAATTAATCTATTTGTGCATAGGACTCAATTTAGTATTAAAGTGATGGTTGATATAAAAGACAGCGACT
CTTGGAATGGTCATTTTAAGAAAATTTCGTTGGAAGAAAGGGGCAAATTTGATGAAGAAACGCTTTCTAATTTGGAAGGC
GTTAAGAGAAATAAAGAATACTCTACAAAGATGGATGGGAGCAAAAACGAGTATATAGTGTTAACCATTCTTGTTGCTAC
GGATGGAACAATGGATTTCCCCAAATTGATCACAAACGCTGCAGATCTGAAAGTTGCTTTGACAAAGCTCTACTCTACAC
CCGAAACAGGTCTTGAGGGTATTCACGTTTTATGGGCACCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis