Browse Element(s) Details


OsAffx.28997.1.S1_at

Description tigr:9636.m00176
TID=OsAffx.28997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0272011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02670Os.6822.1.S1_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_s_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_at2/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02680OsAffx.28996.1.S1_at10/118+1111027..1113308hypothetical protein
LOC_Os08g02690Os.7459.1.S1_at11/118+1114784..1120093MA3 domain-containing protein, putative, expressed
LOC_Os08g02700Os.10579.1.S1_at11/118+1121539..1123208Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os08g02710OsAffx.16795.1.S1_at11/118+1125211..1129368hypothetical protein
LOC_Os08g02720OsAffx.28997.1.S1_at11/118+1131781..1133349hypothetical protein
LOC_Os08g02730Os.57407.1.S1_at11/118+1142598..1144210expressed protein
LOC_Os08g02730Os.1678.1.S1_at1/118+1142598..1144210expressed protein
LOC_Os08g02740OsAffx.28998.1.S1_at11/118+1145194..1146309hypothetical protein
LOC_Os08g02750OsAffx.28999.1.S1_at11/118+1148535..1149905expressed protein
LOC_Os08g02760NANA8+1155898..1157776retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28997.1.S1_at--407--611Chr08:1132509..1132533 (25 bp)
ATGCGCGTTCGCTGAGTTGCTCAAC
LOC_Os08g02720
OsAffx.28997.1.S1_at--780--10691Chr08:1132525..1132549 (25 bp)
TTGCTCAACCGCTTTGGACAATCGA
LOC_Os08g02720
OsAffx.28997.1.S1_at--165--2371Chr08:1132563..1132587 (25 bp)
AAACCTGCAAAAGCTAGTCCCACGT
LOC_Os08g02720
OsAffx.28997.1.S1_at--1162--10051Chr08:1132577..1132600 (24 bp)
TAGTCCCACGTAGTCCTGATCAGGG
LOC_Os08g02720
OsAffx.28997.1.S1_at--770--9831Chr08:1133174..1133198 (25 bp)
TAAAGGATATAACACCGCTGGTCTA
LOC_Os08g02720
OsAffx.28997.1.S1_at--173--4731Chr08:1133190..1133214 (25 bp)
GCTGGTCTACGCGACTACTAAGAAA
LOC_Os08g02720
OsAffx.28997.1.S1_at--1144--5171Chr08:1133221..1133245 (25 bp)
GCAAGTCTACAACAAGCGTCGCAAT
LOC_Os08g02720
OsAffx.28997.1.S1_at--353--7231Chr08:1133238..1133262 (25 bp)
GTCGCAATCCGACCAATGGTTGGTT
LOC_Os08g02720
OsAffx.28997.1.S1_at--1083--10751Chr08:1133261..1133285 (25 bp)
TTGACCTCAACCTACTGACAAGCTC
LOC_Os08g02720
OsAffx.28997.1.S1_at--126--8971Chr08:1133276..1133300 (25 bp)
TGACAAGCTCAGGTTGGACGACGGA
LOC_Os08g02720
OsAffx.28997.1.S1_at--351--8111Chr08:1133291..1133315 (25 bp)
GGACGACGGAGCTAATTAGCCAACT
LOC_Os08g02720
Target Sequence 
ATGCGCGTTCGCTGAGTTGCTCAACCGCTTTGGACAATCGACTAGATTATGCACAAACCTGCAAAAGCTAGTCCCACGTA
GTCCTGATCAGGGGCGACGCCTAAAGGATATAACACCGCTGGTCTACGCGACTACTAAGAAAAAGAGCGCAAGTCTACAA
CAAGCGTCGCAATCCGACCAATGGTTGGTTGACCTCAACCTACTGACAAGCTCAGGTTGGACGACGGAGCTAATTAGCCA
ACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis