Browse Element(s) Details


OsAffx.29038.1.S1_at

Description tigr:9636.m00432
TID=OsAffx.29038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0504011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04990NANA8+2550993..2554852retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g05000NANA8+2557442..2559371retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g05010NANA8+2560311..2561892retrotransposon protein, putative, LINE subclass
LOC_Os08g05020NANA8+2567776..2568576expressed protein
LOC_Os08g05030OsAffx.16833.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030Os.50803.1.S1_at11/118+2570243..2575403expressed protein
LOC_Os08g05030OsAffx.16833.1.S1_x_at9/118+2570243..2575403expressed protein
LOC_Os08g05040OsAffx.29038.1.S1_at11/118+2578493..2579379hypothetical protein
LOC_Os08g05040Os.23271.2.A1_x_at1/118+2578493..2579379hypothetical protein
LOC_Os08g05050OsAffx.16834.1.S1_at11/118+2586317..2586592hypothetical protein
LOC_Os08g05060OsAffx.11392.2.S1_x_at6/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.3.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.25352.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.20408.1.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05060OsAffx.11392.5.S1_at1/118+2590741..2596264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g05070OsAffx.5709.1.S1_at10/118+2600123..2603166hypothetical protein
LOC_Os08g05070Os.46444.1.S1_x_at1/118+2600123..2603166hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29038.1.S1_at--622--7591Chr08:2579306..2579330 (25 bp)
GGGCATGTGTAGTCTTCGGCGGTGA
LOC_Os08g05040
OsAffx.29038.1.S1_at--1083--8351Chr08:2579289..2579313 (25 bp)
GGCGGTGACGGTGCATCACCCTCAT
LOC_Os08g05040
OsAffx.29038.1.S1_at--949--431Chr08:2579180..2579204 (25 bp)
ATCTTCATCCACCTACAAATCCAGG
LOC_Os08g05040
OsAffx.29038.1.S1_at--342--4251Chr08:2579126..2579150 (25 bp)
CCGTCGCTGACTCCTCAAGATGCTT
LOC_Os08g05040
OsAffx.29038.1.S1_at--40--6331Chr08:2579108..2579132 (25 bp)
GATGCTTAAGCACGGTTAGTCCCCT
LOC_Os08g05040
OsAffx.29038.1.S1_at--177--10471Chr08:2579103..2579127 (25 bp)
TTAAGCACGGTTAGTCCCCTCCTCG
LOC_Os08g05040
OsAffx.29038.1.S1_at--259--2251Chr08:2578557..2578581 (25 bp)
AAATAGGCCCTGAGTTGTATGCACC
LOC_Os08g05040
OsAffx.29038.1.S1_at--1035--271Chr08:2578555..2578579 (25 bp)
ATAGGCCCTGAGTTGTATGCACCAC
LOC_Os08g05040
OsAffx.29038.1.S1_at--627--4272Chr11:12031710..12031733 (23 bp)
CCTGAGTTGTATGCACCACCAGTTC
NONE
OsAffx.29038.1.S1_at--1131--4351Chr08:2578534..2578558 (25 bp)
CCACCAGTTCAACCCAATAGCTTAA
LOC_Os08g05040
OsAffx.29038.1.S1_at--1110--2591Chr08:2578524..2578548 (25 bp)
AACCCAATAGCTTAAGGGTCTGCTT
LOC_Os08g05040
Target Sequence 
GGGCATGTGTAGTCTTCGGCGGTGACGGTGCATCACCCTCATCGCCGTCAACGACCCACGCCGCCTCACCCTCATCGCCG
TTGATGGCCCGCCGACCCACCTTCCCGACCTCACCATCCCATCTCCATCTTCATCCACCTACAAATCCAGGCTCCCACCA
CCTCCATCCCGCACCGGCCTCCGTCGCTGACTCCTCAAGATGCTTAAGCACGGTTAGTCCCCTCCTCGCCGTCGCCGCTC
CAAGAGAGGTGGAGGTGGAGGTGGAGCTGTGCCAAATAGGCCCTGAGTTGTATGCACCACCAGTTCAACCCAATAGCTTA
AGGGTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis