Browse Element(s) Details


OsAffx.29046.1.S1_at

Description tigr:9636.m00476
TID=OsAffx.29046.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0547011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05440OsAffx.10693.1.S1_at1/118+2872609..2884290NB-ARC domain containing protein
LOC_Os08g05450Os.35344.3.S1_x_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_s_at11/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450Os.35344.18.S1_x_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.1.S1_s_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_at10/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.3.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.5.S1_x_at9/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.22940.2.S1_at8/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05450OsAffx.31552.2.S1_at1/118+2888691..2896245transposon protein, putative, Mutator sub-class
LOC_Os08g05460OsAffx.5716.1.S1_at11/118+2898272..2900951F-box domain containing protein
LOC_Os08g05470Os.50607.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05470OsAffx.29046.1.S1_at11/118+2903293..2906194expressed protein
LOC_Os08g05480Os.56230.1.S1_at11/118+2912328..2914937F-box domain containing protein, expressed
LOC_Os08g05490Os.10261.1.S1_at11/118+2917873..2922169tyrosyl-tRNA synthetase family protein, expressed
LOC_Os08g05500OsAffx.31174.4.S1_x_at9/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05500OsAffx.31174.5.S1_x_at7/118+2924894..2926622retrotransposon protein, putative, unclassified
LOC_Os08g05510OsAffx.27508.78.S1_s_at11/118+2928448..2933764myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29046.1.S1_at--768--2971Chr08:2904485..2904509 (25 bp)
AATGGTGATTCTGTTCACGATGATT
LOC_Os08g05470
OsAffx.29046.1.S1_at--811--6571Chr08:2904479..2904503 (25 bp)
GATTCTGTTCACGATGATTATAAAG
LOC_Os08g05470
OsAffx.29046.1.S1_at--963--4311Chr08:2904392..2904416 (25 bp)
CCTTGCCTTGTGAATGTATCATCCG
LOC_Os08g05470
OsAffx.29046.1.S1_at--799--3611Chr08:2904386..2904410 (25 bp)
CTTGTGAATGTATCATCCGTGGCAA
LOC_Os08g05470
OsAffx.29046.1.S1_at--299--751Chr08:2904379..2904403 (25 bp)
ATGTATCATCCGTGGCAAAAGCCTA
LOC_Os08g05470
OsAffx.29046.1.S1_at--585--7531Chr08:2904368..2904392 (25 bp)
GTGGCAAAAGCCTACATTCGCCTTG
LOC_Os08g05470
OsAffx.29046.1.S1_at--553--3271Chr08:2904364..2904388 (25 bp)
CAAAAGCCTACATTCGCCTTGATGA
LOC_Os08g05470
OsAffx.29046.1.S1_at--416--2691Chr08:2904272..2904296 (25 bp)
AAGTTGCTAAATGAAGAATACGATG
LOC_Os08g05470
OsAffx.29046.1.S1_at--252--731Chr08:2903899..2904074 (25 bp)
ATGATTGTTCTTGTCACCAGATTGA
LOC_Os08g05470
OsAffx.29046.1.S1_at--515--51Chr08:2903896..2903917 (22 bp)
ATTGTTCTTGTCACCAGATTGAAGG
LOC_Os08g05470
OsAffx.29046.1.S1_at--733--3611Chr08:2903890..2903914 (25 bp)
CTTGTCACCAGATTGAAGGTTTGGC
LOC_Os08g05470
Target Sequence 
AATGGTGATTCTGTTCACGATGATTATAAAGATCTTGTGATAGATACCCCGAGCCTTGTTTCACTCCACCTGGAGTGCCT
TCCCTTTTTAGCTCCTTGCCTTGTGAATGTATCATCCGTGGCAAAAGCCTACATTCGCCTTGATGATATGTCCTTCCCAT
GTTTTGATACGAAATACAACATCCTCAGTGGTTTGTCAAATGTAACAAAATTGAAGTTGCTAAATGAAGAATACGATGAT
GAGGATGAGGATGAGGATGATTCTTTTCGTTCAAGGCAAAACGAGGTACTAAAAAGGGATCTCCGGAGGTGCCAATCATT
CAATAACCTAAAAAAACTGTCTGTCGATGATTGTTCTTGTCACCAGATTGAAGGTTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis