Browse Element(s) Details


OsAffx.29078.1.S1_at

Description tigr:9636.m00668
TID=OsAffx.29078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0732011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07290Os.57432.1.S1_a_at11/118+4063464..4071319HEAT repeat family protein, expressed
LOC_Os08g07300Os.6557.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300OsAffx.29076.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300Os.53790.1.S1_at10/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07320OsAffx.29078.1.S1_at11/118+4092169..4095042expressed protein
LOC_Os08g07330OsAffx.5737.1.S1_x_at11/118+4099054..4103614NB-ARC domain containing protein, expressed
LOC_Os08g07340OsAffx.5737.3.S1_at11/118+4105524..4109073NB-ARC domain containing protein
LOC_Os08g07340OsAffx.5737.1.S1_x_at1/118+4105524..4109073NB-ARC domain containing protein
LOC_Os08g07350Os.26886.2.S1_s_at3/118+4111657..4112034hypothetical protein
LOC_Os08g07350Os.26886.6.S1_s_at2/118+4111657..4112034hypothetical protein
LOC_Os08g07360Os.26886.3.S1_x_at6/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g07360Os.26886.1.S1_x_at5/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29078.1.S1_at--190--9531Chr08:4092596..4092620 (25 bp)
TCTACCTCGTCTCGCTTAATTGGAG
LOC_Os08g07320
OsAffx.29078.1.S1_at--766--8791Chr08:4092493..4092517 (25 bp)
TGTTCATCATCCTGATCACGACGAG
LOC_Os08g07320
OsAffx.29078.1.S1_at--498--1291Chr08:4092441..4092465 (25 bp)
AGATGCGATCTGTTCATCGGCACCG
LOC_Os08g07320
OsAffx.29078.1.S1_at--535--8251Chr08:4092396..4092420 (25 bp)
GGCACCAGTTTCAACGACTACATGA
LOC_Os08g07320
OsAffx.29078.1.S1_at--216--7291Chr08:4092350..4092374 (25 bp)
GTGCCGTCGTTTACATCTGGATTTC
LOC_Os08g07320
OsAffx.29078.1.S1_at--640--8571Chr08:4092333..4092357 (25 bp)
TGGATTTCTATCTACCTCGTCTTCA
LOC_Os08g07320
OsAffx.29078.1.S1_at--126--31Chr08:4092306..4092330 (25 bp)
ATTGGCCTCTTTCTGATGGCGAGCA
LOC_Os08g07320
OsAffx.29078.1.S1_at--279--9411Chr08:4092281..4092305 (25 bp)
TCGGAACGGGACTGGAGGCTCTCAC
LOC_Os08g07320
OsAffx.29078.1.S1_at--1138--8311Chr08:4092265..4092289 (25 bp)
GGCTCTCACCGATGACTATGCAAGA
LOC_Os08g07320
OsAffx.29078.1.S1_at--630--2451Chr08:4092241..4092265 (25 bp)
AAAATTATACTACGTCGCCGCAGCT
LOC_Os08g07320
OsAffx.29078.1.S1_at--1073--3391Chr08:4092221..4092245 (25 bp)
CAGCTCTTCTTACGGTTGCATTTCT
LOC_Os08g07320
Target Sequence 
TCTACCTCGTCTCGCTTAATTGGAGGCAGGTTGTGGCGGTGCCTGTAGCCCTGGTCATCTTCTTCGCCGCCGGTAGATGG
CCCTTCGTTTCTTCTGTCGTCGTTGTTCATCATCCTGATCACGACGAGAATGCCATCAAGGCGGTGATCTTTAGGAGATG
CGATCTGTTCATCGGCACCGGCCTCGTCGGCGTCTTCTTCGGCACCAGTTTCAACGACTACATGACCAAGGCATCGAGGG
TTCCTGGTGCCGTCGTTTACATCTGGATTTCTATCTACCTCGTCTTCACTATTGGCCTCTTTCTGATGGCGAGCATCGGA
ACGGGACTGGAGGCTCTCACCGATGACTATGCAAGAAAATTATACTACGTCGCCGCAGCTCTTCTTACGGTTGCATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis