Browse Element(s) Details


OsAffx.29089.1.S1_at

Description tigr:9636.m00732
TID=OsAffx.29089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0791011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07890Os.12668.1.S1_s_at11/118+4433837..4441289NB-ARC domain containing protein, expressed
LOC_Os08g07890Os.51084.1.S1_x_at2/118+4433837..4441289NB-ARC domain containing protein, expressed
LOC_Os08g07900NANA8+4448215..4453879retrotransposon protein, putative, LINE subclass
LOC_Os08g07910OsAffx.29089.1.S1_at11/118+4454275..4454777expressed protein
LOC_Os08g07920OsAffx.29090.1.S1_at11/118+4455805..4457912disease resistance protein RPM1 homolog, putative
LOC_Os08g07930OsAffx.29091.1.S1_at11/118+4459685..4465429NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29093.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.16886.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.8747.3.S1_x_at2/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.30177.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.50043.1.A1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29172.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29089.1.S1_at--227--10511Chr08:4454626..4454650 (25 bp)
TTCACATCGCCGTTTCCGTGTCAGT
LOC_Os08g07910
OsAffx.29089.1.S1_at--411--531Chr08:4454621..4454645 (25 bp)
ATCGCCGTTTCCGTGTCAGTCTCGG
LOC_Os08g07910
OsAffx.29089.1.S1_at--587--3911Chr08:4454599..4454623 (25 bp)
CGGCTCCCTCTCAGGTGAAGGTTCA
LOC_Os08g07910
OsAffx.29089.1.S1_at--125--6171Chr08:4454574..4454598 (25 bp)
GAGGAGGACATATCTATTCCGCCCC
LOC_Os08g07910
OsAffx.29089.1.S1_at--1125--4171Chr08:4454551..4454575 (25 bp)
CCCAGATGCTCCTGGCGGATCTGCT
LOC_Os08g07910
OsAffx.29089.1.S1_at--713--7951Chr08:4454535..4454559 (25 bp)
GGATCTGCTCGAGCCAGCGTTGAAG
LOC_Os08g07910
OsAffx.29089.1.S1_at--1159--10731Chr08:4454516..4454540 (25 bp)
TTGAAGGGAGCAGGTGGCGCCACCT
LOC_Os08g07910
OsAffx.29089.1.S1_at--99--9471Chr08:4454445..4454469 (25 bp)
TCTGGTGCTCCTTCGTCGAGCCGTG
LOC_Os08g07910
OsAffx.29089.1.S1_at--373--1651Chr08:4454427..4454451 (25 bp)
AGCCGTGGCTACAGCAGTTACTCCG
LOC_Os08g07910
OsAffx.29089.1.S1_at--151--4851Chr08:4454420..4454444 (25 bp)
GCTACAGCAGTTACTCCGCCAGCTG
LOC_Os08g07910
OsAffx.29089.1.S1_at--27--1611Chr08:4454356..4454424 (25 bp)
AGCTGCCTCCTCTGTGCAGGCGACG
LOC_Os08g07910
Target Sequence 
TTCACATCGCCGTTTCCGTGTCAGTCTCGGCTCCCTCTCAGGTGAAGGTTCAGAGGAGGACATATCTATTCCGCCCCCAG
ATGCTCCTGGCGGATCTGCTCGAGCCAGCGTTGAAGGGAGCAGGTGGCGCCACCTCCGCGCTCTCATCCGGCTCCGCGAC
CTCGGCTGGATCCTCGCACCCTCTGGTGCTCCTTCGTCGAGCCGTGGCTACAGCAGTTACTCCGCCAGCTGCCTCCTCTG
TGCAGGCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis