Browse Element(s) Details


OsAffx.29090.1.S1_at

Description tigr:9636.m00733
TID=OsAffx.29090.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0792011/11disease resistance protein RPM1 homolog, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07890Os.12668.1.S1_s_at11/118+4433837..4441289NB-ARC domain containing protein, expressed
LOC_Os08g07890Os.51084.1.S1_x_at2/118+4433837..4441289NB-ARC domain containing protein, expressed
LOC_Os08g07900NANA8+4448215..4453879retrotransposon protein, putative, LINE subclass
LOC_Os08g07910OsAffx.29089.1.S1_at11/118+4454275..4454777expressed protein
LOC_Os08g07920OsAffx.29090.1.S1_at11/118+4455805..4457912disease resistance protein RPM1 homolog, putative
LOC_Os08g07930OsAffx.29091.1.S1_at11/118+4459685..4465429NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29093.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.16886.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.8747.3.S1_x_at2/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.30177.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.50043.1.A1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29172.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07950OsAffx.16887.1.S1_at11/118+4481383..4489254NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29090.1.S1_at--956--5391Chr08:4456137..4456161 (25 bp)
GAAGCTGAGAGCTCGCCATGAGATT
LOC_Os08g07920
OsAffx.29090.1.S1_at--287--1291Chr08:4456169..4456193 (25 bp)
AGATCGAGGCACTCAAGGCCCATGT
LOC_Os08g07920
OsAffx.29090.1.S1_at--1029--431Chr08:4456226..4456250 (25 bp)
ATCTTCTCAAGCCATGGTCCAGCAG
LOC_Os08g07920
OsAffx.29090.1.S1_at--1086--5051Chr08:4456247..4456271 (25 bp)
GCAGCTCTGCCACTTTTACTATCGA
LOC_Os08g07920
OsAffx.29090.1.S1_at--246--7551Chr08:4456324..4456348 (25 bp)
GGGCCTAGGGAGCACATCATTGAAT
LOC_Os08g07920
OsAffx.29090.1.S1_at--594--1271Chr08:4456383..4456407 (25 bp)
AGATCTTAAAGTCGTGTCCATTGTG
LOC_Os08g07920
OsAffx.29090.1.S1_at--842--10251Chr08:4456471..4456495 (25 bp)
TTTGATTGTTCAGCCTTTGTGTCTG
LOC_Os08g07920
OsAffx.29090.1.S1_at--934--8651Chr08:4456494..4456518 (25 bp)
TGTGTCCCGGAACCCTGACATAAAG
LOC_Os08g07920
OsAffx.29090.1.S1_at--1095--1151Chr08:4456552..4456576 (25 bp)
AGTCTTGACAACACACAACCATGGT
LOC_Os08g07920
OsAffx.29090.1.S1_at--615--2211Chr08:4456566..4456590 (25 bp)
ACAACCATGGTCTCCTAATGATGAT
LOC_Os08g07920
OsAffx.29090.1.S1_at--855--2351Chr08:4457835..4457857 (23 bp)
AAAGCCCTGATTACCATTGTACACT
LOC_Os08g07920
Target Sequence 
GAAGCTGAGAGCTCGCCATGAGATTGCCAACCAGATCGAGGCACTCAAGGCCCATGTCGTCGAGGAGAGCAAGCGACACA
AGAGGTATGATCTTCTCAAGCCATGGTCCAGCAGCTCTGCCACTTTTACTATCGACCCTCGACTGCCGGCGCTCTACGAG
GAAGTAGATAAGCTTGTTGGCATCAAAGGGCCTAGGGAGCACATCATTGAATGGTTGACCAACAAGAGGAGTGATAGATC
AAGAGAAGATCTTAAAGTCGTGTCCATTGTGGGTTGTGGCGGTCTTGGCAAGACTACTCTGGCTAACCAGGTGTTCAAGG
AAATCAGACACCAATTTGATTGTTCAGCCTTTGTGTCTGTGTCCCGGAACCCTGACATAAAGAAGATATTAAGAGACATG
CTGAAAGAAGTGAACAGTCTTGACAACACACAACCATGGTCTCCTAATGATGATGAGAGGCAACTAGTCAATAAACTTAG
AGATACACTCCAAGATAAAAGCCCTGATTACCATTGTACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis