Browse Element(s) Details


OsAffx.29122.1.S1_at

Description tigr:9636.m00924
TID=OsAffx.29122.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0970011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09650OsAffx.16923.1.S1_at11/118+5570123..5572311F-box domain containing protein
LOC_Os08g09660OsAffx.16924.1.S1_x_at11/118+5574233..5574541hypothetical protein
LOC_Os08g09660OsAffx.21629.2.S1_x_at3/118+5574233..5574541hypothetical protein
LOC_Os08g09670Os.50702.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09670OsAffx.29121.1.S1_at11/118+5577884..5580353N7 protein, putative, expressed
LOC_Os08g09680NANA8+5586749..5587060hypothetical protein
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_x_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720Os.57083.1.S1_x_at10/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09730Os.54840.1.S1_at11/118+5617319..5620279F-box domain containing protein, expressed
LOC_Os08g09740Os.51875.1.S1_at10/118+5622786..5626083F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29122.1.S1_at--82--8771Chr08:5599707..5599731 (25 bp)
TGTTGCTCTAGATGCGACGATATTC
LOC_Os08g09700
OsAffx.29122.1.S1_at--610--3071Chr08:5599732..5599756 (25 bp)
AATCAGTTGGCCAATGCATGCCCAG
LOC_Os08g09700
OsAffx.29122.1.S1_at--705--10131Chr08:5599767..5599791 (25 bp)
TATGCTGCTGACAGACTGCTTACTG
LOC_Os08g09700
OsAffx.29122.1.S1_at--1006--8091Chr08:5599857..5599881 (25 bp)
GGACCTGAGCATTTGTACTCCTAGT
LOC_Os08g09700
OsAffx.29122.1.S1_at--497--1991Chr08:5599873..5599897 (25 bp)
ACTCCTAGTTTGGTTTCATTGTGCA
LOC_Os08g09700
OsAffx.29122.1.S1_at--206--10451Chr08:5599938..5599962 (25 bp)
TTACCTAATATTCGCAACGGCCATT
LOC_Os08g09700
OsAffx.29122.1.S1_at--779--5151Chr08:5599951..5599975 (25 bp)
GCAACGGCCATTATCATTGATGCTT
LOC_Os08g09700
OsAffx.29122.1.S1_at--207--2071Chr08:5600394..5600418 (25 bp)
ACTTGAGCCTAGGTCTATGGTGCAT
LOC_Os08g09700
OsAffx.29122.1.S1_at--941--9811Chr08:5600419..5600443 (25 bp)
TAACAACATGTTTTCGCCTCTACGT
LOC_Os08g09700
OsAffx.29122.1.S1_at--914--5711Chr08:5600479..5600632 (25 bp)
GACTCTGAGGATCAGTCCGCTGGAT
LOC_Os08g09700
OsAffx.29122.1.S1_at--778--8571Chr08:5600628..5600652 (25 bp)
TGGATTGGAAGTCCCATCTCACGAA
LOC_Os08g09700
Target Sequence 
TGTTGCTCTAGATGCGACGATATTCAATCAGTTGGCCAATGCATGCCCAGCATTGCAAAATATGCTGCTGACAGACTGCT
TACTGGAGGTAGAAGAAATTTCATCAAGCTCATTGAAGAATCTGGATATAATTGACTGCTATATTCTCAAGGACCTGAGC
ATTTGTACTCCTAGTTTGGTTTCATTGTGCATCAAGAATGAAAGAACAGACAATTCTTCGTTCAGAAACTCTTACCTAAT
ATTCGCAACGGCCATTATCATTGATGCTTCAAATGTCAGTAGCATGGAGTTGTTAGCTATGGATAGACAGTTCACATTCG
TGGAGAAAGACGGGGGCGAGCCAATGTTCAAGAATCTCAGAAACTTGAGCCTAGGTCTATGGTGCATTAACAACATGTTT
TCGCCTCTACGTCGATTCGTCCGGCATTCGCCTATGCTGAGGATGGTGACTCTGAGGATCAGTCCGCTGGATTGGAAGTC
CCATCTCACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis