Browse Element(s) Details


OsAffx.29169.1.S1_at

Description gb:NM_184660.1
DB_XREF= gi:34896409
GEN=OSJNBa0051C19.12
TID=OsAffx.29169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0051C19.12), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3252011/11retrotransposon protein, putative, LINE subclass
LOC_Os06g2049010/11retrotransposon protein, putative, LINE subclass
LOC_Os05g087208/11retrotransposon protein, putative, unclassified
LOC_Os08g338708/11retrotransposon protein, putative, unclassified
LOC_Os08g087208/11retrotransposon protein, putative, unclassified
LOC_Os04g311807/11retrotransposon protein, putative, unclassified
LOC_Os04g346805/11retrotransposon protein, putative, unclassified
LOC_Os08g129801/11expressed protein
LOC_Os10g379601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32470Os.9776.1.S1_a_at11/113+18524368..18527092oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g32480Os.52238.1.S1_at1/113+18527335..18530223retrotransposon protein, putative, unclassified
LOC_Os03g32490Os.11150.1.S1_at11/113+18530352..18532456expressed protein
LOC_Os03g32499Os.45017.1.S1_at11/113+18534676..18535271NA
LOC_Os03g32510Os.31497.2.S1_x_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32510Os.31497.1.S1_at11/113+18538030..18539823retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os03g32520OsAffx.29169.1.S1_at11/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32520OsAffx.29169.3.S1_at4/113+18551186..18553110retrotransposon protein, putative, LINE subclass
LOC_Os03g32526Os.8207.1.S1_at2/113+18557959..18563602expressed protein
LOC_Os03g32532OsAffx.27736.1.S1_at10/113+18564857..18565083NA
LOC_Os03g32540OsAffx.14902.1.A1_at4/113+18566095..18567975retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g32550Os.1709.1.S1_x_at11/113+18570532..18572832retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32560Os.54287.1.S1_at6/113+18573417..18576957hypothetical protein
LOC_Os03g32560OsAffx.27653.1.S1_x_at2/113+18573417..18576957hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29169.1.S1_at--1007--5917Chr06:11775764..11775788 (25 bp)
GAGCATTTTATGCAAGCCAAAGGAA
LOC_Os06g20490
OsAffx.29169.1.S1_at--1021--7676Chr08:5046889..5046913 (25 bp)
GGGTCTTGGGATACAGAACCTAGAA
LOC_Os08g08720
OsAffx.29169.1.S1_at--21--7675Chr08:5046896..5046920 (25 bp)
GGGATACAGAACCTAGAACTACAAA
LOC_Os08g08720
OsAffx.29169.1.S1_at--274--2756Chr08:5047007..5047031 (25 bp)
AAGAAAACTTTGACTCATGTAGAGA
LOC_Os08g08720
OsAffx.29169.1.S1_at--136--7677Chr08:5047041..5047065 (25 bp)
GGGATTCTCATTTCTGGTCAGGACT
LOC_Os08g08720
OsAffx.29169.1.S1_at--1095--9455Chr06:11775958..11775982 (25 bp)
TCTGGTCAGGACTCATGATGGTTAA
LOC_Os06g20490
OsAffx.29169.1.S1_at--707--1436Chr08:5047077..5047101 (25 bp)
AGAACATCTTCCTTTCTTGTGGATC
LOC_Os08g08720
OsAffx.29169.1.S1_at--902--9577Chr08:5047083..5047107 (25 bp)
TCTTCCTTTCTTGTGGATCATTAAA
LOC_Os08g08720
OsAffx.29169.1.S1_at--684--2436Chr08:5047105..5047127 (23 bp)
AAAAGTGCACAATGGGACTCAGGAG
LOC_Os08g08720
OsAffx.29169.1.S1_at--182--3216Chr08:5047114..5047274 (25 bp)
CAATGGGACTCAGGAGGGCTATTGT
LOC_Os08g08720
OsAffx.29169.1.S1_at--548--2231Chr03:18552566..18552590 (25 bp)
AAATTGACCGAGCAAAATGGTACCT
LOC_Os03g32520
Target Sequence 
GAGCATTTTATGCAAGCCAAAGGAATGTGGGGGTCTTGGGATACAGAACCTAGAACTACAAAACAAATGCATGTTAAGCA
AATGGTTATATAAACTTTGGAATGAAGAGAGAGTTTGGCAAAACTTGTTAAGAAGGAAATACCTATCTAAGAAAACTTTG
ACTCATGTAGAGAAAAAACCAGGGGATTCTCATTTCTGGTCAGGACTCATGATGGTTAAGAACATCTTCCTTTCTTGTGG
ATCATTAAAAGTGCACAATGGGACTCAGGAGGGCTATTGTGGGTCATATTTAAAAGCTTGGTTGGAAGTGGTCTCAAAGG
TTATATCAATAAAATTGACCGAGCAAAATGGTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis