Browse Element(s) Details


OsAffx.29171.1.S1_at

Description tigr:9636.m01280
TID=OsAffx.29171.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1300011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g12950Os.25411.1.A1_at9/118+7685702..7686955transposon protein, putative, Pong sub-class
LOC_Os08g12960OsAffx.29173.2.S1_at11/118+7687480..7688523MATH domain containing protein
LOC_Os08g12960OsAffx.29173.1.S1_at5/118+7687480..7688523MATH domain containing protein
LOC_Os08g12970OsAffx.29168.1.S1_at11/118+7691945..7692957hypothetical protein
LOC_Os08g12980OsAffx.29169.3.S1_at11/118+7695123..7697084expressed protein
LOC_Os08g12980OsAffx.29169.1.S1_at1/118+7695123..7697084expressed protein
LOC_Os08g12990OsAffx.29170.1.S1_at11/118+7699627..7710283retrotransposon protein, putative, unclassified
LOC_Os08g13000OsAffx.29171.1.S1_at11/118+7711772..7712869BTB/POZ domain containing protein
LOC_Os08g13010OsAffx.29172.1.S1_at10/118+7717968..7720038hypothetical protein
LOC_Os08g13010Os.8747.3.S1_x_at2/118+7717968..7720038hypothetical protein
LOC_Os08g13020OsAffx.16968.1.S1_at11/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13020Os.72.1.S1_x_at1/118+7729150..7730754Speckle-type POZ protein, putative
LOC_Os08g13030OsAffx.29173.1.S1_at11/118+7734031..7735475BTB/POZ domain containing protein
LOC_Os08g13030OsAffx.29173.2.S1_at2/118+7734031..7735475BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29171.1.S1_at--829--8951Chr08:7712272..7712296 (25 bp)
TGAAATCGGCGTGCCACCTTCAGAG
LOC_Os08g13000
OsAffx.29171.1.S1_at--670--3451Chr08:7712359..7712383 (25 bp)
CAGTGTCGAGGGAGAGTCCTTCGCC
LOC_Os08g13000
OsAffx.29171.1.S1_at--251--7611Chr08:7712455..7712479 (25 bp)
GGGCACATTTTCCATAGATATCAAG
LOC_Os08g13000
OsAffx.29171.1.S1_at--669--371Chr08:7712474..7712498 (25 bp)
ATCAAGGACATGCAGCCTTCTGTCT
LOC_Os08g13000
OsAffx.29171.1.S1_at--137--9191Chr08:7712535..7712559 (25 bp)
TGCCTGCTGACATTGGCGATCTTGA
LOC_Os08g13000
OsAffx.29171.1.S1_at--1149--3111Chr08:7712577..7712601 (25 bp)
AATTTATCCGGCATCTAGTCGTGGC
LOC_Os08g13000
OsAffx.29171.1.S1_at--694--6651Chr08:7712632..7712656 (25 bp)
GTTGATGTGCCAAAGCATCCTTGGA
LOC_Os08g13000
OsAffx.29171.1.S1_at--210--2751Chr08:7712672..7712696 (25 bp)
AAGAACGTGGCGACTACGCTGGCTT
LOC_Os08g13000
OsAffx.29171.1.S1_at--418--4951Chr08:7712736..7712760 (25 bp)
GCATTCAGTACATTTGCTCTCTGGA
LOC_Os08g13000
OsAffx.29171.1.S1_at--82--6171Chr08:7712762..7712786 (25 bp)
GAGGTTGATGCTATGGTCAGGACCA
LOC_Os08g13000
OsAffx.29171.1.S1_at--50--2751Chr08:7712806..7712830 (25 bp)
AAGAAGTTGCCCTTCTGTGTTGGCA
LOC_Os08g13000
Target Sequence 
TGAAATCGGCGTGCCACCTTCAGAGCTATCTGAACATTTTGGGAAGCTGTTGGAGGAGGAAGAGGATGTAGGGAGGGATG
TGGTTTTCAGTGTCGAGGGAGAGTCCTTCGCCGCGCACAAGCTCGTGCTCGCCGCGCGATCGCCCGTCTTCAAGGCGGAG
TTTTACGGGGAGATGATTGAAAGGGGCACATTTTCCATAGATATCAAGGACATGCAGCCTTCTGTCTTCAGGGCTCTCCT
GCATTTCATCTACACTGATGTGTTGCCTGCTGACATTGGCGATCTTGAGGGAGATGATTATGTCGAATTTATCCGGCATC
TAGTCGTGGCGGCGGATAGATATGCCATGGATAGGTTGAAGTTGATGTGCCAAAGCATCCTTGGAAAGTATGTTGATGTG
AAGAACGTGGCGACTACGCTGGCTTTAGCTGACCAGCATAACTGTGATAAGCTTAAGGATGTTTGCATTCAGTACATTTG
CTCTCTGGATGAGGTTGATGCTATGGTCAGGACCAAAGGCTATGCAAATCTCAAAAGAAGTTGCCCTTCTGTGTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29171.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis