Browse Element(s) Details


OsAffx.2918.1.S1_at

Description tigr:9630.m03817
TID=OsAffx.2918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3964010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g39570Os.14567.1.S1_at11/112+23879738..23884873acetolactate synthase small subunit, putative, expressed
LOC_Os02g39580Os.46752.1.S1_at11/112+23885097..23887065expressed protein
LOC_Os02g39580Os.5575.1.S1_s_at11/112+23885097..23887065expressed protein
LOC_Os02g39590OsAffx.24650.2.S1_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_s_at11/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39590OsAffx.24650.1.S1_x_at2/112+23887389..23888600GDSL-like Lipase/Acylhydrolase family protein
LOC_Os02g39600Os.19626.1.S1_at11/112+23888792..23892961outer envelope protein, putative, expressed
LOC_Os02g39610Os.51273.1.S1_at11/112+23894569..23895054expressed protein
LOC_Os02g39620OsAffx.2917.1.S1_s_at11/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39620OsAffx.2917.1.S1_at10/112+23898050..23899127stress-induced protein OZI1 precursor, putative, expressed
LOC_Os02g39630Os.9122.1.S1_at11/112+23903531..23907772iron-stress related protein, putative, expressed
LOC_Os02g39640OsAffx.2918.1.S1_at10/112+23908574..23910341expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2918.1.S1_at--1139--3511Chr02:23908606..23908630 (25 bp)
CATGATAACACGTCACCATGGCCAC
LOC_Os02g39640
OsAffx.2918.1.S1_at--387--911Chr02:23908671..23908695 (25 bp)
AGGCGGCGCAGATTGATCGACCACG
LOC_Os02g39640
OsAffx.2918.1.S1_at--952--6591Chr02:23908681..23908705 (25 bp)
GATTGATCGACCACGATGGGCTGAT
LOC_Os02g39640
OsAffx.2918.1.S1_at--1030--791Chr02:23908696..23908720 (25 bp)
ATGGGCTGATGGCAGTGACACCAAT
LOC_Os02g39640
OsAffx.2918.1.S1_at--650--1451NONE
AGAAGAACCTGCACCCATGCAGAAA
NONE
OsAffx.2918.1.S1_at--200--2531Chr02:23910088..23910112 (25 bp)
AACTCTTGTTGATTGACCCAACCCA
LOC_Os02g39640
OsAffx.2918.1.S1_at--757--10371Chr02:23910116..23910140 (25 bp)
TTTTCCTCCGCCGAGGGTATCAGGA
LOC_Os02g39640
OsAffx.2918.1.S1_at--237--10151Chr02:23910133..23910157 (25 bp)
TATCAGGACCGTCGTGGGACTGCTC
LOC_Os02g39640
OsAffx.2918.1.S1_at--1093--7291Chr02:23910169..23910193 (25 bp)
GTGCTGCACTGGCACAACATCAGGA
LOC_Os02g39640
OsAffx.2918.1.S1_at--251--2511Chr02:23910184..23910208 (25 bp)
AACATCAGGAAACTGCCGGCGGCGT
LOC_Os02g39640
OsAffx.2918.1.S1_at--423--4311Chr02:23910212..23910236 (25 bp)
CCTTTTCACCGCAATAGCATTTATT
LOC_Os02g39640
Target Sequence 
CATGATAACACGTCACCATGGCCACCGTGATGTTGAGGCGGCGCAGATTGATCGACCACGATGGGCTGATGGCAGTGACA
CCAATAGGGGCACCAAGAAGAACCTGCACCCATGCAGAAAACTCTTGTTGATTGACCCAACCCAACGTTTTCCTCCGCCG
AGGGTATCAGGACCGTCGTGGGACTGCTCGCCTCCTCAACGTGCTGCACTGGCACAACATCAGGAAACTGCCGGCGGCGT
CTCCCTTTTCACCGCAATAGCATTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis