Browse Element(s) Details


OsAffx.29184.1.S1_at

Description tigr:9636.m01388
TID=OsAffx.29184.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=xyloglucan endotransglycosylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1398011/11Glycosyl hydrolases family 16 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13950OsAffx.8624.1.S1_s_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.8624.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13950OsAffx.30891.1.S1_x_at1/118+8349060..8354153transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13960OsAffx.19542.3.S1_x_at2/118+8360777..8366475retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g13970Os.38395.1.S1_at9/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.4.S1_x_at9/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.3.S1_x_at8/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.2.S1_x_at7/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13970Os.38395.5.S1_at2/118+8369304..8377150retrotransposon protein, putative, unclassified
LOC_Os08g13980OsAffx.29184.1.S1_at11/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13980Os.45884.1.S1_x_at1/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13980Os.45884.1.S1_at1/118+8378227..8379456Glycosyl hydrolases family 16 protein, expressed
LOC_Os08g13990Os.6596.1.S1_at1/118+8383043..8386420pentatricopeptide, putative, expressed
LOC_Os08g14000Os.48441.1.S1_at10/118+8387933..8391462Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14010OsAffx.9664.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14010Os.18665.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14020OsAffx.18899.1.S1_at7/118+8399646..8403479Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0005618cellular_componentcell wall
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29184.1.S1_at--510--1851Chr08:8378996..8379020 (25 bp)
ACGACGTGCCGTGGGAGTACCACGA
LOC_Os08g13980
OsAffx.29184.1.S1_at--1066--5111Chr08:8378599..8378836 (25 bp)
GCACATCATAATTCTGGTGGACGGC
LOC_Os08g13980
OsAffx.29184.1.S1_at--733--1931Chr08:8378579..8378603 (25 bp)
ACGGCGTGCCGATCAGGGACTACCG
LOC_Os08g13980
OsAffx.29184.1.S1_at--219--4051Chr08:8378570..8378594 (25 bp)
CGATCAGGGACTACCGGAACACGGC
LOC_Os08g13980
OsAffx.29184.1.S1_at--127--2771Chr08:8378448..8378472 (25 bp)
AAGACGGACTGGTCGGAGGCACCCT
LOC_Os08g13980
OsAffx.29184.1.S1_at--868--8111Chr08:8378443..8378467 (25 bp)
GGACTGGTCGGAGGCACCCTTCTTC
LOC_Os08g13980
OsAffx.29184.1.S1_at--1141--3951Chr08:8378345..8378369 (25 bp)
CGGAGTCGCCGTGGTTCGATCAGCA
LOC_Os08g13980
OsAffx.29184.1.S1_at--150--4171Chr08:8378339..8378363 (25 bp)
CGCCGTGGTTCGATCAGCAGGAGAT
LOC_Os08g13980
OsAffx.29184.1.S1_at--1038--9531Chr08:8378273..8378297 (25 bp)
TCTACGACTACTGCGAGGACACCAA
LOC_Os08g13980
OsAffx.29184.1.S1_at--1141--2011Chr08:8378267..8378291 (25 bp)
ACTACTGCGAGGACACCAAACGGTT
LOC_Os08g13980
OsAffx.29184.1.S1_at--467--8031Chr08:8378257..8378281 (25 bp)
GGACACCAAACGGTTCAAGGACACG
LOC_Os08g13980
Target Sequence 
ACGACGTGCCGTGGGAGTACCACGACGAGGTGGACCTGGAGTTCCTCGGGAACGTCACCGGCGAGCCCTACACCCTGCAC
ACCAACATCTTCGCCAATGGCGTCGGCGGCCGCGAGCAGCAGTTCCGCCTCTGGTTCGACCCCACCGCCGACTTCCACAC
CTACTCCATCGTCTGGAACCCCAAGCACATCATAATTCTGGTGGACGGCGTGCCGATCAGGGACTACCGGAACACGGCGG
CGCGCGGCGGGCCGGCGTTCCCGACGTGGCAGAAGATGCGGGCCCACGGCAGCCTGTGGAACGCCGACGACTGGGCGACG
CAGGGCGGGAGGGTGAAGACGGACTGGTCGGAGGCACCCTTCTTCGCCTACTACCGGGGGCTCCGGGTGACGCCGTGCGC
GCCGTCCCCCGGCGTGGCGTGGTGCGGCGATGAGCCGCCGGAGTCGCCGTGGTTCGATCAGCAGGAGATGGACGCGGCGG
CGCTGAGCAAGGCGAGGCAGGAGCACCTGCTCTACGACTACTGCGAGGACACCAAACGGTTCAAGGACACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis