Browse Element(s) Details


OsAffx.29187.1.S1_at

Description tigr:9636.m01398
TID=OsAffx.29187.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1408011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14010OsAffx.9664.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14010Os.18665.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14020OsAffx.18899.1.S1_at7/118+8399646..8403479Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14030NANA8+8405726..8406156hypothetical protein
LOC_Os08g14040OsAffx.29185.1.S1_at10/118+8407411..8408267hypothetical protein
LOC_Os08g14050OsAffx.29186.1.S1_at11/118+8409098..8412222expressed protein
LOC_Os08g14050Os.16414.1.S1_x_at8/118+8409098..8412222expressed protein
LOC_Os08g14060Os.10419.1.S1_a_at9/118+8412912..8414034Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14070Os.39123.1.S1_at10/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14070Os.39123.2.S1_s_at4/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14080OsAffx.29187.1.S1_at11/118+8421463..8421925hypothetical protein
LOC_Os08g14090NANA8+8424759..8427052Dienelactone hydrolase family protein
LOC_Os08g14109Os.8582.1.S1_at11/118+8430980..8439573Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14130OsAffx.29188.1.S1_at10/118+8442291..8443326hypothetical protein
LOC_Os08g14140NANA8+8445317..8445571hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29187.1.S1_at--598--2591Chr08:8421522..8421546 (25 bp)
AACGCACTCCCAGTGCCTCGACAAC
LOC_Os08g14080
OsAffx.29187.1.S1_at--246--2211Chr08:8421542..8421566 (25 bp)
ACAACCCGCCGGACTTGACAGCCGG
LOC_Os08g14080
OsAffx.29187.1.S1_at--587--8591Chr08:8421584..8421608 (25 bp)
TGGTCGTACATGACCTGGCAGGCTT
LOC_Os08g14080
OsAffx.29187.1.S1_at--671--4011Chr08:8421588..8421612 (25 bp)
CGTACATGACCTGGCAGGCTTCGAG
LOC_Os08g14080
OsAffx.29187.1.S1_at--623--8271Chr08:8421600..8421624 (25 bp)
GGCAGGCTTCGAGGCCTATGTCACT
LOC_Os08g14080
OsAffx.29187.1.S1_at--614--8291Chr08:8421604..8421628 (25 bp)
GGCTTCGAGGCCTATGTCACTGGTG
LOC_Os08g14080
OsAffx.29187.1.S1_at--662--4911Chr08:8421605..8421629 (25 bp)
GCTTCGAGGCCTATGTCACTGGTGC
LOC_Os08g14080
OsAffx.29187.1.S1_at--5--9391Chr08:8421608..8421632 (25 bp)
TCGAGGCCTATGTCACTGGTGCCGT
LOC_Os08g14080
OsAffx.29187.1.S1_at--1071--871Chr08:8421611..8421635 (25 bp)
AGGCCTATGTCACTGGTGCCGTCCA
LOC_Os08g14080
OsAffx.29187.1.S1_at--220--4451Chr08:8421613..8421637 (25 bp)
GCCTATGTCACTGGTGCCGTCCATT
LOC_Os08g14080
OsAffx.29187.1.S1_at--95--10111Chr08:8421616..8421640 (25 bp)
TATGTCACTGGTGCCGTCCATTCCA
LOC_Os08g14080
Target Sequence 
AACGCACTCCCAGTGCCTCGACAACCCGCCGGACTTGACAGCCGGCGGAGGTGAGGCCGGCGTGGTCGTACATGACCTGG
CAGGCTTCGAGGCCTATGTCACTGGTGCCGTCCATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis