Browse Element(s) Details


OsAffx.29209.1.S1_at

Description tigr:9636.m01493
TID=OsAffx.29209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1491010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14860Os.15199.1.S1_at11/118+8948951..8953293Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
LOC_Os08g14870OsAffx.29207.2.S1_at11/118+8957450..8957785hypothetical protein
LOC_Os08g14870OsAffx.29207.1.S1_x_at1/118+8957450..8957785hypothetical protein
LOC_Os08g14880Os.21862.1.S1_at11/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880Os.35093.1.A1_x_at3/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880OsAffx.29842.3.S1_x_at1/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14890OsAffx.5818.1.S1_at11/118+8968896..8970845expressed protein
LOC_Os08g14900NANA8+8971186..8972365expressed protein
LOC_Os08g14910OsAffx.29209.1.S1_at10/118+8976912..8979045hypothetical protein
LOC_Os08g14920NANA8+8984466..8984795hypothetical protein
LOC_Os08g14930OsAffx.29210.1.S1_at11/118+8986307..8987469hypothetical protein
LOC_Os08g14940OsAffx.14481.1.S1_at1/118+8995491..8998748Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29209.1.S1_at--652--10531Chr08:8978982..8979006 (25 bp)
TTCAGGATGAATTTCGCCGGATCTC
LOC_Os08g14910
OsAffx.29209.1.S1_at--124--3971Chr08:8978965..8978989 (25 bp)
CGGATCTCGGGTTTCTTTGCTTGGG
LOC_Os08g14910
OsAffx.29209.1.S1_at--182--9231Chr08:8978931..8978955 (25 bp)
TCCAGTTCTAATTGGTCTCTAACCC
LOC_Os08g14910
OsAffx.29209.1.S1_at--154--2691Chr08:8977826..8977850 (25 bp)
AAGCTCCAATTCAAGCGGGCGGCAG
LOC_Os08g14910
OsAffx.29209.1.S1_at--753--5071Chr08:8977805..8977829 (25 bp)
GCAGCCGACATTGTCACGACCAATG
LOC_Os08g14910
OsAffx.29209.1.S1_at--834--1851Chr08:8977790..8977814 (25 bp)
ACGACCAATGCCGTGCAGAGCACAG
LOC_Os08g14910
OsAffx.29209.1.S1_at--853--9591Chr08:8977742..8977761 (20 bp)
TAAGGCAATACGCTTTCAGGCTACC
LOC_Os08g14910
OsAffx.29209.1.S1_at--333--10331NONE
TTTCAGGCTACCACGGCGATTTACA
NONE
OsAffx.29209.1.S1_at--740--3231Chr08:8976976..8977000 (25 bp)
CACTGCAGGTTGGTTCCGGTTTCGT
LOC_Os08g14910
OsAffx.29209.1.S1_at--315--7871Chr08:8976959..8976983 (25 bp)
GGTTTCGTCGAATGGCTATTTTGCA
LOC_Os08g14910
OsAffx.29209.1.S1_at--865--154Chr08:13843058..13843078 (21 bp)
ATTTTGCAAAAAGCTCCTCGTGTTT
NONE
Target Sequence 
TTCAGGATGAATTTCGCCGGATCTCGGGTTTCTTTGCTTGGGGAGGTATTTTCCAGTTCTAATTGGTCTCTAACCCAAGT
TAGACATGGAGCAGGCTGTCAACTTGGTGACAAGCTCCAATTCAAGCGGGCGGCAGCCGACATTGTCACGACCAATGCCG
TGCAGAGCACAGGTGTTGGAGACAAGCGGAGGAAGCGGTATAAGGCAATACGCTTTCAGGCTACCACGGCGATTTACACG
TCGCTCCTTTCTGCCCACGGCTCCTCGCACTCCCGCGGGTTTTTGGGTGGTGTGGAGTGTAGATCTGGTTTTTGGGTGAT
GTGGAGTGTGCACGTGTGTCGGTCTCCACTGCAGGTTGGTTCCGGTTTCGTCGAATGGCTATTTTGCAAAAAGCTCCTCG
TGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis