Browse Element(s) Details


OsAffx.29220.1.S1_at

Description tigr:9636.m01566
TID=OsAffx.29220.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1561011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15550OsAffx.17012.1.S1_at11/118+9452302..9453139hypothetical protein
LOC_Os08g15550OsAffx.18229.1.S1_x_at1/118+9452302..9453139hypothetical protein
LOC_Os08g15560OsAffx.29219.1.S1_at11/118+9454638..9455462hypothetical protein
LOC_Os08g15570NANA8+9457660..9463755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15580OsAffx.21897.5.S1_x_at4/118+9464072..9467011retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15590Os.46319.1.S1_s_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.2.S1_x_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.5828.2.S1_at11/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.1.S1_at4/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.26733.3.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.5828.1.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590Os.52575.1.S1_x_at3/118+9469276..9474723hypothetical protein
LOC_Os08g15590OsAffx.9743.2.S1_x_at2/118+9469276..9474723hypothetical protein
LOC_Os08g15600Os.26733.3.S1_x_at1/118+9475529..9475939Stomatin-like protein 2, putative
LOC_Os08g15610OsAffx.29220.1.S1_at11/118+9478018..9478773hypothetical protein
LOC_Os08g15620Os.55229.1.S1_s_at1/118+9478887..9479945hypothetical protein
LOC_Os08g15630NANA8+9486898..9487758hypothetical protein
LOC_Os08g15639NANA8+9494397..9495652NA
LOC_Os08g15650Os.49502.1.S1_at11/118+9500942..9502205expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29220.1.S1_at--920--9171Chr08:9478351..9478375 (25 bp)
TGCCGCTGTCCATCACGCTGCAGGA
LOC_Os08g15610
OsAffx.29220.1.S1_at--1064--1731Chr08:9478389..9478413 (25 bp)
ACCTTCGAGCTCCAAGAACACTGAC
LOC_Os08g15610
OsAffx.29220.1.S1_at--1133--9191Chr08:9478399..9478423 (25 bp)
TCCAAGAACACTGACCAACGCATGT
LOC_Os08g15610
OsAffx.29220.1.S1_at--810--3271Chr08:9478488..9478512 (25 bp)
CAACAACGGCGAGGGCTGCAGTAAA
LOC_Os08g15610
OsAffx.29220.1.S1_at--790--7571Chr08:9478500..9478524 (25 bp)
GGGCTGCAGTAAAATGCATCATCAT
LOC_Os08g15610
OsAffx.29220.1.S1_at--14--9631Chr08:9478521..9478545 (25 bp)
TCATGAGATCATGGCTGCTGGCTCC
LOC_Os08g15610
OsAffx.29220.1.S1_at--215--4571Chr08:9478577..9478601 (25 bp)
GCGCCGACCGTGTGAATCGTGTGAT
LOC_Os08g15610
OsAffx.29220.1.S1_at--268--8691Chr08:9478587..9478611 (25 bp)
TGTGAATCGTGTGATCGCCCGGCTA
LOC_Os08g15610
OsAffx.29220.1.S1_at--777--8851Chr08:9478598..9478622 (25 bp)
TGATCGCCCGGCTACAAGAGCGCGC
LOC_Os08g15610
OsAffx.29220.1.S1_at--601--10831Chr08:9478688..9478712 (25 bp)
TTGTGATGTTGATGCGTGTCGTCAT
LOC_Os08g15610
OsAffx.29220.1.S1_at--711--7651Chr08:9478715..9478739 (25 bp)
GGGTGCTCCTTGGAGACCCCACGGT
LOC_Os08g15610
Target Sequence 
TGCCGCTGTCCATCACGCTGCAGGAGGGCGGCGCCACCACCTTCGAGCTCCAAGAACACTGACCAACGCATGTACCTGCA
CGTCAAGTGCATCAAGGAGATCATGGCTGGCTTGGGCCACGGCGGCGGCGGCGGCGGCAACAACGGCGAGGGCTGCAGTA
AAATGCATCATCATGAGATCATGGCTGCTGGCTCCTGCCGCGGCGGCGCCGACGCTGACGGCGAGGGCGCCGACCGTGTG
AATCGTGTGATCGCCCGGCTACAAGAGCGCGCCGGCGGCGGCGGCGGCGGCGGCGGGAGCAGTAAGAGTAAGCTGGTGAG
GCGCGTGTGCGAGGTGCTTGTGATGTTGATGCGTGTCGTCATCGGGGTGCTCCTTGGAGACCCCACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis