Browse Element(s) Details


OsAffx.29260.1.S1_at

Description tigr:9636.m01819
TID=OsAffx.29260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1806011/11expressed protein
LOC_Os08g179901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g18000Os.47763.1.A1_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000OsAffx.5863.1.S1_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000Os.47763.1.A1_s_at11/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18000Os.27037.1.A1_at1/118+11027732..11044834F-box domain containing protein, expressed
LOC_Os08g18030OsAffx.29259.1.S1_at10/118+11045555..11048391hypothetical protein
LOC_Os08g18044Os.13551.1.S1_at11/118+11049105..11056097GMFP4, putative, expressed
LOC_Os08g18060OsAffx.29260.1.S1_at11/118+11058119..11059756expressed protein
LOC_Os08g18070NANA8+11061548..11063635hypothetical protein
LOC_Os08g18080OsAffx.25854.1.S1_at6/118+11071466..11080429hypothetical protein
LOC_Os08g18080OsAffx.27864.4.S1_x_at1/118+11071466..11080429hypothetical protein
LOC_Os08g18080Os.50472.1.S1_at1/118+11071466..11080429hypothetical protein
LOC_Os08g18090Os.28943.1.S1_x_at1/118+11083202..11086564retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29260.1.S1_at--73--9031Chr08:11059196..11059220 (25 bp)
TGCAGGTACCTCACCTCCAATGGCG
LOC_Os08g18060
OsAffx.29260.1.S1_at--779--3192Chr08:11059213..11059237 (25 bp)
CAATGGCGGCTACCGGTTCATCGGC
LOC_Os08g18060
OsAffx.29260.1.S1_at--796--9331Chr08:11059269..11059293 (25 bp)
TCGCCGTCTGCGTCAACAAAGGAGA
LOC_Os08g18060
OsAffx.29260.1.S1_at--380--8091Chr08:11059305..11059329 (25 bp)
GGAGCGTCCACGTCAAGCTGCTGGA
LOC_Os08g18060
OsAffx.29260.1.S1_at--146--9731Chr08:11059317..11059341 (25 bp)
TCAAGCTGCTGGAGTTCCGGTCGCG
LOC_Os08g18060
OsAffx.29260.1.S1_at--71--5771Chr08:11059436..11059460 (25 bp)
GACGATCCGTGCAAGGGCAAGGCAC
LOC_Os08g18060
OsAffx.29260.1.S1_at--935--1711Chr08:11059462..11059486 (25 bp)
ACCACCGGCCAACGCGAAGAAGAAT
LOC_Os08g18060
OsAffx.29260.1.S1_at--1006--8051Chr08:11059510..11059534 (25 bp)
GGAGCACGTAAACGCTACTTCGTCG
LOC_Os08g18060
OsAffx.29260.1.S1_at--1123--9191Chr08:11059617..11059641 (25 bp)
TCCAACGGGCGGTGAATGGAATGCT
LOC_Os08g18060
OsAffx.29260.1.S1_at--768--2491Chr08:11059674..11059698 (25 bp)
AACAGGCTCTTCTTGCGTCGAAGGA
LOC_Os08g18060
OsAffx.29260.1.S1_at--238--931Chr08:11059698..11059722 (25 bp)
AGGAAGCAGGCTCGAAACCCTCGTC
LOC_Os08g18060
Target Sequence 
TGCAGGTACCTCACCTCCAATGGCGGCTACCGGTTCATCGGCGAGTGGGGCAAGTTCCTACGGAACAACGGCCTCGCCGT
CTGCGTCAACAAAGGAGAGGAATGGACCCGGAGCGTCCACGTCAAGCTGCTGGAGTTCCGGTCGCGGAGGCTGCCGCAGG
CCGACAAGTCCGGCCACCCGGACGGCGCCCTCGGCTTCGTCGTGCTGCACGGCGACGACAGCGACAGCGACGACGGCGAG
GACGATCCGTGCAAGGGCAAGGCACCACCACCGGCCAACGCGAAGAAGAATAAGAAGAAGAAGAGCAACAGCAAGGAGCA
CGTAAACGCTACTTCGTCGTCGGCGGCGGCGTCGGCGTCGGTGGCGGTGGAGCGCGTGACGAGGAGTGTGGAACAGGAAG
CAGACGATGAAGATGAGAGGATCCAACGGGCGGTGAATGGAATGCTGAAGCTACACGACGAGGGGTCGCAAGGGGAGCAA
CAGGCTCTTCTTGCGTCGAAGGAGGAAGCAGGCTCGAAACCCTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis