Browse Element(s) Details


OsAffx.29273.1.S1_at

Description tigr:9636.m01887
TID=OsAffx.29273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1923011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19210Os.49742.2.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19210Os.49742.1.S1_at11/118+11480945..11485029expressed protein
LOC_Os08g19220Os.45976.1.S1_x_at1/118+11487582..11494927transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g19230OsAffx.29273.1.S1_at11/118+11498186..11498776hypothetical protein
LOC_Os08g19240OsAffx.5876.1.S1_at11/118+11504244..11504579hypothetical protein
LOC_Os08g19240OsAffx.25952.1.S1_s_at1/118+11504244..11504579hypothetical protein
LOC_Os08g19250OsAffx.19542.3.S1_x_at7/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250OsAffx.12926.1.S1_at2/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250Os.15946.1.S1_at1/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19250OsAffx.21754.1.S1_x_at1/118+11505987..11512467retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19260NANA8+11513453..11515754hypothetical protein
LOC_Os08g19270OsAffx.17069.1.S1_at11/118+11519917..11524190hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29273.1.S1_at--765--5631Chr08:11498216..11498240 (25 bp)
GACACGGTGACGAGTGCCGCACGGG
LOC_Os08g19230
OsAffx.29273.1.S1_at--733--4211Chr08:11498302..11498326 (25 bp)
CCGCGCGGACGGACGAAGCTTCGTT
LOC_Os08g19230
OsAffx.29273.1.S1_at--891--1071Chr08:11498331..11498355 (25 bp)
AGGGCAACGAGGAGAGCCGCCTACT
LOC_Os08g19230
OsAffx.29273.1.S1_at--100--4171Chr08:11498475..11498499 (25 bp)
TCCCGGTCCCGGTGGTCGCAATGAA
LOC_Os08g19230
OsAffx.29273.1.S1_at--1043--7731Chr08:11498485..11498509 (25 bp)
GGTGGTCGCAATGAAGCTCCTCTCT
LOC_Os08g19230
OsAffx.29273.1.S1_at--286--4711Chr08:11498532..11498556 (25 bp)
GCGGCGACTCTAGCTCTGCTAAGGG
LOC_Os08g19230
OsAffx.29273.1.S1_at--1128--8171Chr08:11498579..11498603 (25 bp)
GGAACCGATGTCTACAGGAGCCCGT
LOC_Os08g19230
OsAffx.29273.1.S1_at--945--1971Chr08:11498625..11498649 (25 bp)
ACTGCATCGCTCAGCCGAAAAGTGG
LOC_Os08g19230
OsAffx.29273.1.S1_at--1024--2311Chr08:11498643..11498667 (25 bp)
AAAGTGGCGAGAGACTCGTCCCTCA
LOC_Os08g19230
OsAffx.29273.1.S1_at--169--4691Chr08:11498701..11498725 (25 bp)
GCGGATGGAAAAGCAGACGTCTGTC
LOC_Os08g19230
OsAffx.29273.1.S1_at--917--7151Chr08:11498719..11498743 (25 bp)
GTCTGTCGGCGAGGGAACAACCCAA
LOC_Os08g19230
Target Sequence 
GACACGGTGACGAGTGCCGCACGGGTCGCGGTGGTCGAGGCGGCTGACGGTGAGCGCGAGGCGGACGAGGCGGCGGACGG
CGAGCGCCGCGCGGACGGACGAAGCTTCGTTGGTGAGGGCAACGAGGAGAGCCGCCTACTCCGCCGTCGCCACCACCGCG
GATACGTCGGCCCCGCCGCTTGCCGCTCTCTCTCTCTTATGGGTCCGCCTCGGCGCCGTCCCGGCTGTGCCGCGCTCTGG
GAGGACGCGGAGGAAGCCATCCCGGTCCCGGTGGTCGCAATGAAGCTCCTCTCTCCCTCTTCGTCGTCGTCGGCCGGCGG
CGACTCTAGCTCTGCTAAGGGGTGGAATAGGAATACGAGCTGGGGAACCGATGTCTACAGGAGCCCGTCGCCCCCCAATG
CGTCCCTCGACTGCATCGCTCAGCCGAAAAGTGGCGAGAGACTCGTCCCTCAGCCGGGGGACGCGCTCCATCGTGGGGAG
CCGGCGCGGATGGAAAAGCAGACGTCTGTCGGCGAGGGAACAACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis