Browse Element(s) Details


OsAffx.29276.1.S1_at

Description tigr:9636.m01912
TID=OsAffx.29276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1947011/11hypothetical protein
LOC_Os07g108101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19420Os.23482.1.S1_at11/118+11601048..11602472O-methyltransferase family protein, expressed
LOC_Os08g19440OsAffx.1646.1.S1_x_at1/118+11607169..11608996retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450OsAffx.22722.1.S1_at4/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450Os.45173.1.S1_x_at3/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450OsAffx.22722.1.S1_x_at2/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19450Os.38764.1.S1_x_at1/118+11611430..11615485retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19460OsAffx.22171.1.S1_at1/118+11616580..11619009retrotransposon protein, putative, unclassified
LOC_Os08g19470OsAffx.29276.1.S1_at11/118+11624048..11625058hypothetical protein
LOC_Os08g19480OsAffx.28452.1.S1_x_at11/118+11632016..11636192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19480Os.27141.1.S1_at11/118+11632016..11636192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19480OsAffx.28452.1.S1_at10/118+11632016..11636192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19480Os.57365.1.S1_at9/118+11632016..11636192retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g19490NANA8+11637601..11638277hypothetical protein
LOC_Os08g19500NANA8+11642521..11645812retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29276.1.S1_at--1107--8851Chr08:11624766..11624790 (25 bp)
TGATGACATTGAACAAGGCGTCCTT
LOC_Os08g19470
OsAffx.29276.1.S1_at--1005--671Chr08:11624768..11624792 (25 bp)
ATGACATTGAACAAGGCGTCCTTGA
LOC_Os08g19470
OsAffx.29276.1.S1_at--850--3191Chr08:11624779..11624919 (25 bp)
CAAGGCGTCCTTGATAAGGTTTGTC
LOC_Os08g19470
OsAffx.29276.1.S1_at--860--8351Chr08:11624782..11624922 (25 bp)
GGCGTCCTTGATAAGGTTTGTCTGC
LOC_Os08g19470
OsAffx.29276.1.S1_at--1098--7251Chr08:11624785..11624925 (25 bp)
GTCCTTGATAAGGTTTGTCTGCCCT
LOC_Os08g19470
OsAffx.29276.1.S1_at--63--7871Chr08:11624912..11624936 (25 bp)
GGTTTGTCTGCCCTTTTCATGTCGA
LOC_Os08g19470
OsAffx.29276.1.S1_at--716--10251Chr08:11624914..11624938 (25 bp)
TTTGTCTGCCCTTTTCATGTCGACT
LOC_Os08g19470
OsAffx.29276.1.S1_at--123--8731Chr08:11624916..11624940 (25 bp)
TGTCTGCCCTTTTCATGTCGACTTG
LOC_Os08g19470
OsAffx.29276.1.S1_at--123--9171Chr08:11624920..11624944 (25 bp)
TGCCCTTTTCATGTCGACTTGCTGA
LOC_Os08g19470
OsAffx.29276.1.S1_at--1068--4172Chr08:11624922..11624946 (25 bp)
CCCTTTTCATGTCGACTTGCTGATT
LOC_Os08g19470
OsAffx.29276.1.S1_at--46--9131Chr08:11624939..11624963 (25 bp)
TGCTGATTCATGATGAGAGGGCAAT
LOC_Os08g19470
Target Sequence 
TGATGACATTGAACAAGGCGTCCTTGATAAGGTTTGTCTGCCCTTTTCATGTCGACTTGCTGATTCATGATGAGAGGGCA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis