Browse Element(s) Details


OsAffx.29289.1.S1_at

Description tigr:9636.m02034
TID=OsAffx.29289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2067010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g20644OsAffx.17091.1.S1_at11/118+12401693..12402157expressed protein
LOC_Os08g20660Os.27359.1.S1_at11/118+12405895..12418726Sucrose-phosphate synthase 1, putative, expressed
LOC_Os08g20670OsAffx.29289.1.S1_at10/118+12420977..12422121hypothetical protein
LOC_Os08g20680Os.11220.1.S1_at11/118+12423980..12424983expressed protein
LOC_Os08g20690OsAffx.5883.1.S1_at10/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_at3/118+12426836..12429826hypothetical protein
LOC_Os08g20690OsAffx.13772.1.S1_x_at2/118+12426836..12429826hypothetical protein
LOC_Os08g20700OsAffx.31869.1.S1_at9/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.5.S1_x_at4/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.2.S1_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20700OsAffx.31869.3.S1_s_at1/118+12434806..12435939retrotransposon protein, putative, unclassified
LOC_Os08g20720NANA8+12442451..12448123retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29289.1.S1_at--475--9351Chr08:12421017..12421041 (25 bp)
TCGCACCTCAACTCCTAGTGGTTGA
LOC_Os08g20670
OsAffx.29289.1.S1_at--1096--1091NONE
AGTGGTTGAGGAATGTCAGACTTCA
NONE
OsAffx.29289.1.S1_at--1104--8191Chr08:12421598..12421622 (25 bp)
GGAATGTCAGACTTCAGGGCTTTGT
LOC_Os08g20670
OsAffx.29289.1.S1_at--675--5691Chr08:12421607..12421631 (25 bp)
GACTTCAGGGCTTTGTCGCGGACTT
LOC_Os08g20670
OsAffx.29289.1.S1_at--27--9651Chr08:12421611..12421635 (25 bp)
TCAGGGCTTTGTCGCGGACTTTATA
LOC_Os08g20670
OsAffx.29289.1.S1_at--81--10251Chr08:12421618..12421642 (25 bp)
TTTGTCGCGGACTTTATAACTACTC
LOC_Os08g20670
OsAffx.29289.1.S1_at--570--4651Chr08:12421624..12421648 (25 bp)
GCGGACTTTATAACTACTCGATTAC
LOC_Os08g20670
OsAffx.29289.1.S1_at--118--7932Chr08:12421676..12421947 (25 bp)
GGATTACGGAATAAAGGCCCACCAT
LOC_Os08g20670
OsAffx.29289.1.S1_at--205--334Chr10:7135591..7135694 (24 bp)
ATAAAGGCCCACCATATACCAAATC
NONE
OsAffx.29289.1.S1_at--409--8415Chr10:22224708..22224728 (21 bp)
GGCCCACCATATACCAAATCTTATA
NONE
OsAffx.29289.1.S1_at--530--10132Chr08:12421947..12421971 (25 bp)
TATACCAAATCTTATATGGAATCGT
LOC_Os08g20670
Target Sequence 
TCGCACCTCAACTCCTAGTGGTTGAGGAATGTCAGACTTCAGGGCTTTGTCGCGGACTTTATAACTACTCGATTACTCGA
GAATGGTTGGTGGAGTTCGACAAGGATTACGGAATAAAGGCCCACCATATACCAAATCTTATATGGAATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis