Browse Element(s) Details


OsAffx.29324.1.S1_at

Description tigr:9636.m02344
TID=OsAffx.29324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2395011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23900NANA8+14331826..14332278hypothetical protein
LOC_Os08g23910Os.10827.1.S1_x_at11/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23910Os.46055.2.S1_x_at6/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23920Os.20602.2.S1_x_at10/118+14340109..14342289hAT family dimerisation domain containing protein
LOC_Os08g23930Os.26442.1.S1_at11/118+14343073..14349437ENT domain containing protein, expressed
LOC_Os08g23930Os.57545.1.S1_x_at1/118+14343073..14349437ENT domain containing protein, expressed
LOC_Os08g23940OsAffx.29323.1.S1_at11/118+14350614..14351523hypothetical protein
LOC_Os08g23950OsAffx.29324.1.S1_at11/118+14354860..14356642hypothetical protein
LOC_Os08g23960OsAffx.29325.1.S1_at11/118+14360075..14361715F-box domain containing protein
LOC_Os08g23980OsAffx.29326.1.S1_at11/118+14377117..14377437hypothetical protein
LOC_Os08g23990OsAffx.197.1.S1_at1/118+14379435..14382366retrotransposon protein, putative, unclassified
LOC_Os08g23990OsAffx.15798.1.S1_at1/118+14379435..14382366retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29324.1.S1_at--619--8211Chr08:14355394..14355418 (25 bp)
GGAATACCCCGTCGTGAACATGGAT
LOC_Os08g23950
OsAffx.29324.1.S1_at--188--5731Chr08:14355301..14355325 (25 bp)
GACTGACGAGAACTACTCATCGCTG
LOC_Os08g23950
OsAffx.29324.1.S1_at--270--5551Chr08:14355207..14355231 (25 bp)
GAAACTCTCGTTAGCAGGTTCTCCA
LOC_Os08g23950
OsAffx.29324.1.S1_at--1141--9211Chr08:14355186..14355210 (25 bp)
TCCAGCTACTTCAATTCCAATCATA
LOC_Os08g23950
OsAffx.29324.1.S1_at--831--2671Chr08:14355052..14355076 (25 bp)
AAGCGACACCGCTGAGCCGAAGATC
LOC_Os08g23950
OsAffx.29324.1.S1_at--223--1671Chr08:14355038..14355062 (25 bp)
AGCCGAAGATCGTCCTGGTCCTGGA
LOC_Os08g23950
OsAffx.29324.1.S1_at--969--7251Chr08:14355021..14355045 (25 bp)
GTCCTGGAGAGATTTTCATGGCGAT
LOC_Os08g23950
OsAffx.29324.1.S1_at--478--3571Chr08:14354983..14355007 (25 bp)
CATACAGGACATGGCTGGCGGCGAC
LOC_Os08g23950
OsAffx.29324.1.S1_at--766--8351Chr08:14354967..14354991 (25 bp)
GGCGGCGACGATATGCTGAAAGCTT
LOC_Os08g23950
OsAffx.29324.1.S1_at--850--2951Chr08:14354922..14354946 (25 bp)
AATGGCCGTTGTTTTAGATCTCTTC
LOC_Os08g23950
OsAffx.29324.1.S1_at--1109--7551Chr08:14354895..14354919 (25 bp)
GGGCTCCCGATGAGTTTCAACTTTG
LOC_Os08g23950
Target Sequence 
GGAATACCCCGTCGTGAACATGGATGATCCTCACCTCATCCGCCTCGCCGTCACCGGGGCGCGCCAGGAGGAAGGAAGAA
CCTACAGTGACGAGACTGACGAGAACTACTCATCGCTGATCATGGTCGACACGAGGAGGAAGACGATGCCCTCCGTGCCC
CCCTTCCTCCACCTGCCATTTAACGGCGAAACTCTCGTTAGCAGGTTCTCCAGCTACTTCAATTCCAATCATAGTAGCAA
CAATGGCGGCGGCGGCGGCGGCGGTGCATTGCCGAGCAAAATCCATGTCAACATTGAGCCACCGCCACCACCGGCCGCCG
TCGCCACCGGCGAGCCGCGAACAAGCGACACCGCTGAGCCGAAGATCGTCCTGGTCCTGGAGAGATTTTCATGGCGATTG
AAGGGATACAGCATACAGGACATGGCTGGCGGCGACGATATGCTGAAAGCTTACACCATTCTTAGCCAGGACAATGGCCG
TTGTTTTAGATCTCTTCTGGGGCTCCCGATGAGTTTCAACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis