Browse Element(s) Details


OsAffx.29376.1.S1_x_at

Description tigr:9636.m02665
TID=OsAffx.29376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g247603/11retrotransposon, putative, centromere-specific
LOC_Os07g298403/11SWIM zinc finger family protein
LOC_Os01g244202/11expressed protein
LOC_Os11g230401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g187001/11plasma membrane sulphate transporter, putative
LOC_Os07g247701/11hypothetical protein
LOC_Os07g270701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g225801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g218201/11hypothetical protein
LOC_Os06g251901/11hypothetical protein
LOC_Os07g248401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g185001/11hypothetical protein
LOC_Os10g399341/11hypothetical protein
LOC_Os02g247801/11hypothetical protein
LOC_Os09g046601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24720NANA6+14521418..14521889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24730Os.11724.2.S2_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24730Os.11724.2.S1_s_at11/116+14525896..14530806hydrolase, alpha/beta fold family protein, expressed
LOC_Os06g24740OsAffx.15601.1.S1_at11/116+14534000..14534698hypothetical protein
LOC_Os06g24740OsAffx.31273.1.S1_x_at2/116+14534000..14534698hypothetical protein
LOC_Os06g24750NANA6+14535307..14536451transposon protein, putative, Mariner sub-class
LOC_Os06g24760OsAffx.29376.1.S1_x_at3/116+14537250..14539242retrotransposon, putative, centromere-specific
LOC_Os06g24770NANA6+14548905..14550131retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24780Os.46715.1.S1_at2/116+14553147..14553971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24780Os.46715.1.S1_x_at1/116+14553147..14553971retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24790Os.52609.1.S1_at1/116+14554133..14557764retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g24800NANA6+14558689..14559387retrotransposon protein, putative, unclassified
LOC_Os06g24810OsAffx.22492.1.S1_x_at1/116+14560157..14566172retrotransposon protein, putative, unclassified
LOC_Os06g24810OsAffx.22492.1.S1_at1/116+14560157..14566172retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008272biological_processsulfate transport
GO:0015116molecular_functionsulfate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29376.1.S1_x_at--974--6271Chr08:16358681..16358705 (25 bp)
GATGATCATCAAGGACGTCCAAGTT
NONE
OsAffx.29376.1.S1_x_at--541--8831Chr08:16358679..16358703 (25 bp)
TGATCATCAAGGACGTCCAAGTTAA
NONE
OsAffx.29376.1.S1_x_at--983--4091Chr08:16358634..16358658 (25 bp)
CGACTTCGAGTACGATTCGGAGTTC
NONE
OsAffx.29376.1.S1_x_at--82--6972Chr09:2484593..2484770 (25 bp)
GTACGATTCGGAGTTCAGGACCAGT
LOC_Os09g04660
OsAffx.29376.1.S1_x_at--259--1151Chr08:16358596..16358620 (25 bp)
ACTAAAACGAGTGCCCAGGTCGCAT
NONE
OsAffx.29376.1.S1_x_at--988--2372Chr11:12493839..12494269 (25 bp)
AAACGAGTGCCCAGGTCGCATACGT
NONE
OsAffx.29376.1.S1_x_at--422--42930Chr12:9638606..9638959 (25 bp)
CCTTTCCAATGGGATTAGCCTTCTC
NONE
OsAffx.29376.1.S1_x_at--20--4456Chr06:14537819..14537843 (24 bp)
GCCTTCTCGGCAGGTCATCCGTGTT
LOC_Os06g24760
OsAffx.29376.1.S1_x_at--177--94512Chr08:2425560..2425579 (20 bp)
TCGGCAGGTCATCCGTGTTTCGACA
NONE
OsAffx.29376.1.S1_x_at--213--82712Chr08:2425560..2425581 (22 bp)
GGCAGGTCATCCGTGTTTCGACACG
NONE
OsAffx.29376.1.S1_x_at--943--9234Chr08:2425566..2425733 (25 bp)
TCCGTGTTTCGACACGGGTGCTAAC
NONE
Target Sequence 
GATGATCATCAAGGACGTCCAAGTTAAGGTGGAGGCCCAAAACAAGTCGACTTCGAGTACGATTCGGAGTTCAGGACCAG
TCTGCACTAAAACGAGTGCCCAGGTCGCATACGTGCTCGGATTGGGGAGTTCTTTATATGGATGTAAAGCTAAGAAGATA
ACCTTTCCAATGGGATTAGCCTTCTCGGCAGGTCATCCGTGTTTCGACACGGGTGCTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29376.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis