Browse Element(s) Details


OsAffx.29377.1.S1_at

Description tigr:9636.m02676
TID=OsAffx.29377.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2708011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27040Os.20657.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27040Os.51117.1.S1_at11/118+16386668..16391090Lipid phosphate phosphatase 2, putative, expressed
LOC_Os08g27050Os.25180.1.S1_at11/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_at6/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27050OsAffx.32230.1.A1_x_at4/118+16392609..16398391hydrolase, alpha/beta fold family protein, expressed
LOC_Os08g27060OsAffx.5947.1.S1_at11/118+16400080..16401081hypothetical protein
LOC_Os08g27070Os.10188.1.S1_at11/118+16405483..16409850expressed protein
LOC_Os08g27080OsAffx.29377.1.S1_at11/118+16412001..16412252hypothetical protein
LOC_Os08g27090Os.34615.1.S1_at10/118+16413639..1641780630S ribosomal protein S17, putative, expressed
LOC_Os08g27100OsAffx.29378.1.S1_at11/118+16426593..16427736hypothetical protein
LOC_Os08g27110NANA8+16434711..16439146retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29377.1.S1_at--482--9951Chr08:16412054..16412078 (25 bp)
TACCCATCCTTCCTGGTGCTCCAAG
LOC_Os08g27080
OsAffx.29377.1.S1_at--901--4751Chr08:16412094..16412118 (25 bp)
GCTGCATTCCTTCTCGTTTACGAGG
LOC_Os08g27080
OsAffx.29377.1.S1_at--670--4931Chr08:16412097..16412121 (25 bp)
GCATTCCTTCTCGTTTACGAGGTCA
LOC_Os08g27080
OsAffx.29377.1.S1_at--889--10571Chr08:16412104..16412128 (25 bp)
TTCTCGTTTACGAGGTCACCACCAC
LOC_Os08g27080
OsAffx.29377.1.S1_at--797--10331Chr08:16412110..16412134 (25 bp)
TTTACGAGGTCACCACCACTTCCGG
LOC_Os08g27080
OsAffx.29377.1.S1_at--1104--3631Chr08:16412138..16412162 (25 bp)
CTTCTGCCGGGCATTGGTGCACTGC
LOC_Os08g27080
OsAffx.29377.1.S1_at--1031--8271Chr08:16412147..16412171 (25 bp)
GGCATTGGTGCACTGCCCTTGGTCC
LOC_Os08g27080
OsAffx.29377.1.S1_at--75--10851Chr08:16412165..16412189 (25 bp)
TTGGTCCCGCCAAGGCGCCAATCGT
LOC_Os08g27080
OsAffx.29377.1.S1_at--734--3051Chr08:16412184..16412208 (25 bp)
AATCGTCGCCCTGACCACAAGAGAG
LOC_Os08g27080
OsAffx.29377.1.S1_at--738--9411Chr08:16412186..16412210 (25 bp)
TCGTCGCCCTGACCACAAGAGAGTG
LOC_Os08g27080
OsAffx.29377.1.S1_at--950--9331Chr08:16412189..16412213 (25 bp)
TCGCCCTGACCACAAGAGAGTGGGA
LOC_Os08g27080
Target Sequence 
TACCCATCCTTCCTGGTGCTCCAAGGGGCTAACCGGCCCCGCTGCATTCCTTCTCGTTTACGAGGTCACCACCACTTCCG
GCCTCTTCTGCCGGGCATTGGTGCACTGCCCTTGGTCCCGCCAAGGCGCCAATCGTCGCCCTGACCACAAGAGAGTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis