Browse Element(s) Details


OsAffx.29384.2.S1_at

Description tigr:9640.m02371
TID=OsAffx.29384.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ulp1 protease family, C-terminal catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2488011/11Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24810OsAffx.19810.4.S1_s_at11/1112+14239428..14239862hypothetical protein
LOC_Os12g24820NANA12+14241592..14244778hypothetical protein
LOC_Os12g24830OsAffx.22699.1.S1_x_at1/1112+14245156..14248476retrotransposon protein, putative, unclassified
LOC_Os12g24830Os.52731.1.S1_at1/1112+14245156..14248476retrotransposon protein, putative, unclassified
LOC_Os12g24840NANA12+14248691..14250919retrotransposon protein, putative, unclassified
LOC_Os12g24850OsAffx.31867.1.S1_x_at11/1112+14251902..14252111hypothetical protein
LOC_Os12g24859NANA12+14254495..14255190NA
LOC_Os12g24870OsAffx.19810.3.S1_at11/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.2.S1_at5/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.19810.1.S1_x_at3/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24870OsAffx.640.1.S1_x_at1/1112+14256443..14258594SWIM zinc finger family protein
LOC_Os12g24880OsAffx.29384.2.S1_at11/1112+14259350..14262852Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g24880OsAffx.29384.1.S1_at2/1112+14259350..14262852Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g24890OsAffx.21465.1.S1_x_at2/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.38172.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.43567.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24900OsAffx.7693.1.S1_x_at11/1112+14279521..14279904hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29384.2.S1_at--208--4212Chr12:14260268..14260384 (25 bp)
CCCCTGGCTTGACGGATAAATTGAT
LOC_Os12g24880
OsAffx.29384.2.S1_at--1138--5191Chr12:14260241..14260265 (25 bp)
GCAATTCCGAGAAGTTTGTGTCTGA
LOC_Os12g24880
OsAffx.29384.2.S1_at--289--1232Chr12:14259922..14259946 (25 bp)
AGTTGTTCTTCCCAATTGTACGTGA
LOC_Os12g24880
OsAffx.29384.2.S1_at--347--1552Chr12:14259895..14259919 (25 bp)
AGCATTGGGTGCTGACTTGCATCAA
LOC_Os12g24880
OsAffx.29384.2.S1_at--489--4751Chr12:14259885..14259909 (25 bp)
GCTGACTTGCATCAACCTTTTGTGG
LOC_Os12g24880
OsAffx.29384.2.S1_at--1036--10572Chr12:14259819..14259843 (25 bp)
TTCTCAGTGGTTCATACTGTCTCAG
LOC_Os12g24880
OsAffx.29384.2.S1_at--204--9931Chr12:14259705..14259829 (25 bp)
TACTGTCTCAGAACCTGGTCACAAA
LOC_Os12g24880
OsAffx.29384.2.S1_at--286--9252Chr12:14259614..14259638 (25 bp)
TCCTCCACAGTATCCAGTACAAAGC
LOC_Os12g24880
OsAffx.29384.2.S1_at--240--10271Chr12:14259490..14259514 (25 bp)
TTTGATTGCGGTTTCTTCAGCTTGA
LOC_Os12g24880
OsAffx.29384.2.S1_at--172--7631Chr12:14259417..14259441 (25 bp)
GGGACATGCCTAACTACCAAAAATT
LOC_Os12g24880
OsAffx.29384.2.S1_at--1041--8871Chr12:14259381..14259405 (25 bp)
TGATGGTTTCTTCGCATCTGGCTAA
LOC_Os12g24880
Target Sequence 
CCCCTGGCTTGACGGATAAATTGATTTGCAATTCCGAGAAGTTTGTGTCTGAAAGCTGTGTAAAATGGGTGAAATCAATC
AACAAGGAGCAAAAACTTCCTAAACTAGATCTGTTCTCATTTAACATAAGTTACTTTTTTTTTGCCTCCCACCCCATCAA
GTTGTTCTTCCCAATTGTACGTGACAAGCATTGGGTGCTGACTTGCATCAACCTTTTGTGGGAACAAATAAATTACTTTG
ATTCAATCAAGAGGGGTGATATTTCTCAGTGGTTCATACTGTCTCAGAACCTGGTCACAAATTTCACCAAGGTTGCAGTG
GATGCTAAAATTCCAATCAAAGATATATCAAAGTTTCAAACTTGCTCTCCTCCACAGTATCCAGTACAAAGCAATTTGTT
TGATTGCGGTTTCTTCAGCTTGAGATACATTGAGAATTGGGATGGGAAAAACCTGCAATCATTCAATGAAGGGGACATGC
CTAACTACCAAAAATTCATGACACACATGATGGTTTCTTCGCATCTGGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29384.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis