Browse Element(s) Details


OsAffx.2942.1.S1_at

Description tigr:9630.m04065
TID=OsAffx.2942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g424608/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42420NANA2+25512463..25516385retrotransposon protein, putative, unclassified
LOC_Os02g42430NANA2+25517597..25518511GRAM domain containing protein
LOC_Os02g42440Os.8962.1.S1_at11/112+25521815..25523187GRAM domain-containing protein, putative, expressed
LOC_Os02g42450OsAffx.26230.2.S1_at11/112+25533613..25534355Ripening-related protein, putative, expressed
LOC_Os02g42450OsAffx.26230.2.S1_x_at11/112+25533613..25534355Ripening-related protein, putative, expressed
LOC_Os02g42460OsAffx.2942.1.S1_at8/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_at3/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_x_at2/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.28736.2.S1_at1/112+25537499..25541540hypothetical protein
LOC_Os02g42470NANA2+25544704..25544949expressed protein
LOC_Os02g42479OsAffx.24689.1.S1_at10/112+25551670..25552531hypothetical protein
LOC_Os02g42488OsAffx.24690.1.S1_at11/112+25553858..25554435hypothetical protein
LOC_Os02g42497OsAffx.24689.1.S1_at11/112+25555953..25556814hypothetical protein
LOC_Os02g42506OsAffx.24690.1.S1_at11/112+25558141..25558718hypothetical protein
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2942.1.S1_at--704--3331Chr02:25538353..25538377 (25 bp)
CAGGATTGAGCATATAAAACATTGG
LOC_Os02g42460
OsAffx.2942.1.S1_at--139--7791NONE
GGTCAACTGGACCAAGGCTCACCGT
NONE
OsAffx.2942.1.S1_at--739--9711NONE
TCAACTGGACCAAGGCTCACCGTGC
NONE
OsAffx.2942.1.S1_at--1157--3771NONE
CTGGACCAAGGCTCACCGTGCCGAG
NONE
OsAffx.2942.1.S1_at--537--1771Chr02:25541447..25541471 (25 bp)
ACCGTGCCGAGGGAGTAGCCTAAGG
LOC_Os02g42460
OsAffx.2942.1.S1_at--228--1071Chr02:25541456..25541480 (25 bp)
AGGGAGTAGCCTAAGGCACGACCGT
LOC_Os02g42460
OsAffx.2942.1.S1_at--399--8031Chr02:25541458..25541482 (25 bp)
GGAGTAGCCTAAGGCACGACCGTGA
LOC_Os02g42460
OsAffx.2942.1.S1_at--63--1171Chr02:25541460..25541484 (25 bp)
AGTAGCCTAAGGCACGACCGTGATT
LOC_Os02g42460
OsAffx.2942.1.S1_at--451--6971Chr02:25541461..25541485 (25 bp)
GTAGCCTAAGGCACGACCGTGATTG
LOC_Os02g42460
OsAffx.2942.1.S1_at--796--1671Chr02:25541463..25541487 (25 bp)
AGCCTAAGGCACGACCGTGATTGGG
LOC_Os02g42460
OsAffx.2942.1.S1_at--580--7571Chr02:25541486..25541510 (25 bp)
GGGCGGGCCAAATTGCCGTGCCTTG
LOC_Os02g42460
Target Sequence 
CAGGATTGAGCATATAAAACATTGGCTTTCACATCAAGAACAGGAAGGTAAAAACAATTTTGAAGAGAAGAACAATGAAG
CACCTAAATTATGTCAAGAGAGCGTTTCAGGTAATTTAAGTGATGGTCAACTGGACCAAGGCTCACCGTGCCGAGGGAGT
AGCCTAAGGCACGACCGTGATTGGGGCGGGCCAAATTGCCGTGCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis