Browse Element(s) Details


OsAffx.29420.1.S1_at

Description tigr:9636.m02941
TID=OsAffx.29420.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2961011/11hypothetical protein
LOC_Os06g222601/11hypothetical protein
LOC_Os01g401201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29580OsAffx.17228.1.S1_at11/118+18009435..18010342hypothetical protein
LOC_Os08g29590Os.5362.1.S1_at11/118+18023865..18028139Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g29600Os.55263.1.S1_at11/118+18028233..18028755seed maturation protein PM41, putative, expressed
LOC_Os08g29610OsAffx.29420.1.S1_at11/118+18032630..18034006hypothetical protein
LOC_Os08g29630OsAffx.28472.1.S1_x_at11/118+18047792..18047992hypothetical protein
LOC_Os08g29630OsAffx.31730.1.S1_x_at2/118+18047792..18047992hypothetical protein
LOC_Os08g29640OsAffx.29421.1.S1_at8/118+18051761..18052636hypothetical protein
LOC_Os08g29650Os.12957.1.S1_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650OsAffx.17230.1.S1_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650OsAffx.17230.1.S1_x_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650Os.12957.1.S1_x_at9/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29420.1.S1_at--860--2251Chr08:18032667..18032691 (25 bp)
AAATAGCGGCTCACAACATCATCAC
LOC_Os08g29610
OsAffx.29420.1.S1_at--595--2611Chr08:18032705..18032729 (25 bp)
AACCCGGTCGCATGGGACAATTTGG
LOC_Os08g29610
OsAffx.29420.1.S1_at--357--7231Chr08:18032711..18032735 (25 bp)
GTCGCATGGGACAATTTGGCTACAA
LOC_Os08g29610
OsAffx.29420.1.S1_at--600--391Chr08:18032738..18032762 (25 bp)
ATGTTTGCCAAGTGTCGGAAGACGG
LOC_Os08g29610
OsAffx.29420.1.S1_at--363--2471Chr08:18032765..18032789 (25 bp)
AACAGGGCCCAGGTTCAGTACATTT
LOC_Os08g29610
OsAffx.29420.1.S1_at--678--1171Chr08:18032781..18032805 (25 bp)
AGTACATTTGGCGTGTCTGTCGGAA
LOC_Os08g29610
OsAffx.29420.1.S1_at--209--4671Chr08:18032791..18032815 (25 bp)
GCGTGTCTGTCGGAAGCAGTTCAAC
LOC_Os08g29610
OsAffx.29420.1.S1_at--695--7851Chr08:18032826..18032850 (25 bp)
GGTTTGAGTCGCAGGCTACCGGTCT
LOC_Os08g29610
OsAffx.29420.1.S1_at--861--7331Chr08:18032846..18032870 (25 bp)
GGTCTCGGTCGTGATCCGCGTACGA
LOC_Os08g29610
OsAffx.29420.1.S1_at--519--6991Chr08:18032865..18032889 (25 bp)
GTACGAGTGCCATTCTCGCCGACGA
LOC_Os08g29610
OsAffx.29420.1.S1_at--1032--81918Chr12:16902017..16902041 (25 bp)
GGAATATAATATCCCGGCCTTTACT
NONE
Target Sequence 
AAATAGCGGCTCACAACATCATCACCACTCGCAACCCCAACCCGGTCGCATGGGACAATTTGGCTACAAAAATGTTTGCC
AAGTGTCGGAAGACGGTGAACAGGGCCCAGGTTCAGTACATTTGGCGTGTCTGTCGGAAGCAGTTCAACATGTGGGCGTG
GTTTGAGTCGCAGGCTACCGGTCTCGGTCGTGATCCGCGTACGAGTGCCATTCTCGCCGACGACGCCTGGTGGAGAATGC
AAGAAGGGATAATGGAATATAATATCCCGGCCTTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis