Browse Element(s) Details


OsAffx.29445.1.S1_at

Description tigr:9636.m03100
TID=OsAffx.29445.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3104011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31000Os.17407.1.S1_at11/118+19006833..19009834expressed protein
LOC_Os08g31010NANA8+19012410..19017302retrotransposon protein, putative, unclassified
LOC_Os08g31020OsAffx.29444.1.S1_at11/118+19020281..19021350hypothetical protein
LOC_Os08g31030Os.48724.1.S1_at11/118+19024364..19029010HOTHEAD protein precursor, putative, expressed
LOC_Os08g31040OsAffx.29445.1.S1_at11/118+19031295..19033871expressed protein
LOC_Os08g31060OsAffx.29446.1.S1_at11/118+19040682..19048021Phospholipase D. Active site motif family protein, expressed
LOC_Os08g31070OsAffx.17257.1.S1_at11/118+19051528..19053502expressed protein
LOC_Os08g31070OsAffx.1396.1.S1_x_at2/118+19051528..19053502expressed protein
LOC_Os08g31080OsAffx.17258.1.S1_at11/118+19057948..19059318expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29445.1.S1_at--479--5711Chr08:19031330..19031354 (25 bp)
GACTAAGAATGACCCCAGCAGTTTA
LOC_Os08g31040
OsAffx.29445.1.S1_at--748--1491Chr08:19031346..19031610 (25 bp)
AGCAGTTTAGTGAGCAACTTGCCCC
LOC_Os08g31040
OsAffx.29445.1.S1_at--1081--1671Chr08:19031636..19031660 (25 bp)
AGCCTTCAGAAGACGATGGATACAA
LOC_Os08g31040
OsAffx.29445.1.S1_at--549--5851Chr08:19031663..19031687 (25 bp)
GACCAGCTGTGGTGCGAACATGCTA
LOC_Os08g31040
OsAffx.29445.1.S1_at--16--5491Chr08:19031678..19031702 (25 bp)
GAACATGCTAGGATGGCCCGATCTT
LOC_Os08g31040
OsAffx.29445.1.S1_at--713--8391Chr08:19031692..19031716 (25 bp)
GGCCCGATCTTCACGATAGTAGGTT
LOC_Os08g31040
OsAffx.29445.1.S1_at--231--291Chr08:19031707..19031728 (22 bp)
ATAGTAGGTTGACGATTGACAGACA
LOC_Os08g31040
OsAffx.29445.1.S1_at--438--5971Chr08:19032946..19032970 (25 bp)
GAGAAGCTGTGGTCGAAATACATCC
LOC_Os08g31040
OsAffx.29445.1.S1_at--1049--2251Chr08:19032961..19032985 (25 bp)
AAATACATCCACAGCACGGCACAGG
LOC_Os08g31040
OsAffx.29445.1.S1_at--103--2131Chr08:19032981..19033005 (25 bp)
ACAGGACAGCCCAGAGGGTGCAAAT
LOC_Os08g31040
OsAffx.29445.1.S1_at--310--7351Chr08:19032998..19033022 (25 bp)
GTGCAAATATTACCTGTATCTGTCT
LOC_Os08g31040
Target Sequence 
GACTAAGAATGACCCCAGCAGTTTAGTGAGCAACTTGCCCCCAAACGTACACAGGGCACAAGCAGAAGCCTTCAGAAGAC
GATGGATACAAAGGACCAGCTGTGGTGCGAACATGCTAGGATGGCCCGATCTTCACGATAGTAGGTTGACGATTGACAGA
CAACAATCAGGAGAAGCTGTGGTCGAAATACATCCACAGCACGGCACAGGACAGCCCAGAGGGTGCAAATATTACCTGTA
TCTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis