Browse Element(s) Details


OsAffx.29461.1.S1_at

Description tigr:9636.m03203
TID=OsAffx.29461.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=U-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3206011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32000OsAffx.17286.1.S1_at11/118+19719246..19719512hypothetical protein
LOC_Os08g32010OsAffx.29460.1.S1_at10/118+19725548..19726611hypothetical protein
LOC_Os08g32020Os.25754.2.S1_x_at2/118+19729912..19732953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32020Os.53479.1.S1_x_at1/118+19729912..19732953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32030OsAffx.20387.1.S1_x_at1/118+19733568..19736501transposon protein, putative, unclassified
LOC_Os08g32040NANA8+19736756..19737622retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g32050NANA8+19738574..19739692hypothetical protein
LOC_Os08g32060OsAffx.29461.1.S1_at11/118+19742427..19744856U-box domain containing protein, expressed
LOC_Os08g32070NANA8+19748621..19749139amino acid transporter, putative
LOC_Os08g32080Os.8449.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32080Os.56903.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32090Os.21287.1.S1_at10/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.31771.2.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.16899.1.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29461.1.S1_at--1014--551Chr08:19743979..19744003 (25 bp)
ATCCTGTTCTACCTCTCGTCGGACG
LOC_Os08g32060
OsAffx.29461.1.S1_at--1025--9431Chr08:19743997..19744021 (25 bp)
TCGGACGCCGGCTACTGCGATGAGA
LOC_Os08g32060
OsAffx.29461.1.S1_at--592--5811Chr08:19744000..19744024 (25 bp)
GACGCCGGCTACTGCGATGAGATCA
LOC_Os08g32060
OsAffx.29461.1.S1_at--616--4851Chr08:19744007..19744031 (25 bp)
GCTACTGCGATGAGATCAGCCGCAT
LOC_Os08g32060
OsAffx.29461.1.S1_at--320--4631Chr08:19744013..19744037 (25 bp)
GCGATGAGATCAGCCGCATCCCGGA
LOC_Os08g32060
OsAffx.29461.1.S1_at--138--2751Chr08:19744090..19744114 (25 bp)
AAGAACGCGCTGGTGAGCCTCTACG
LOC_Os08g32060
OsAffx.29461.1.S1_at--546--1831Chr08:19744094..19744118 (25 bp)
ACGCGCTGGTGAGCCTCTACGGCGT
LOC_Os08g32060
OsAffx.29461.1.S1_at--734--8851Chr08:19744427..19744451 (25 bp)
TGATGCCGTCCCTGTACGCGCTCAT
LOC_Os08g32060
OsAffx.29461.1.S1_at--933--871Chr08:19744481..19744505 (25 bp)
AGGCGAGGTGGCTCGTCAACGAAAT
LOC_Os08g32060
OsAffx.29461.1.S1_at--61--9411Chr08:19744493..19744517 (25 bp)
TCGTCAACGAAATCCACCGGCATTA
LOC_Os08g32060
OsAffx.29461.1.S1_at--1083--1751Chr08:19744508..19744532 (25 bp)
ACCGGCATTACGAGCAGCGGCAGCC
LOC_Os08g32060
Target Sequence 
ATCCTGTTCTACCTCTCGTCGGACGCCGGCTACTGCGATGAGATCAGCCGCATCCCGGAGGCGATCCCGACGCTGGTCCG
GCTCGTGCGGGAGGGCGCGTACCGCGGCCGGAAGAACGCGCTGGTGAGCCTCTACGGCGTGCTCCAGCGCGGCGCGGGCG
GCCACGGCAGGGCGGTGTCCGCCGGCGCCGTGGCGGCGCTCGCGTCCCTGCTGCCCGGCGACCGCGACGACCTCGCCAAC
GACGCCGTCGCGCTGCTGGCGAGGCTCGCCGAGCAGCCCGCCGGCGCGGCGGCCGTCCTCTCCAGCTCGGCGCTCGTCAC
GCGGCTCGTCGACTTCCTCGGCGCGTCGGCGTCGCGGTCGGCCAAGGACCACTGCGCGGCGCTGCTGGCGTCGCTGTGCC
GGCACGGCGGCGACGCGGTGGTCGCCCTGCTGGGGAAGACGCCGGGGCTGATGCCGTCCCTGTACGCGCTCATCGCCGAC
GGCGGCGCGCAGGGGAGCAAGAAGGCGAGGTGGCTCGTCAACGAAATCCACCGGCATTACGAGCAGCGGCAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis