Browse Element(s) Details


OsAffx.29532.2.S1_x_at

Description tigr:9630.m03068
TID=OsAffx.29532.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3239011/11hypothetical protein
LOC_Os02g022101/11aminotransferase, class III family protein, expressed
LOC_Os08g246601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32360Os.47463.1.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32360Os.14491.2.S1_x_at3/112+19106054..19113843transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g32370Os.20910.1.S1_at11/112+19116035..19119757Inositol polyphosphate kinase family protein, expressed
LOC_Os02g32380NANA2+19123027..19124601hypothetical protein
LOC_Os02g32390OsAffx.29532.2.S1_x_at11/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.2.S1_at10/112+19136481..19138368hypothetical protein
LOC_Os02g32390OsAffx.29532.1.S1_x_at4/112+19136481..19138368hypothetical protein
LOC_Os02g32400OsAffx.24537.1.S1_at10/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32400Os.9470.1.S1_at1/112+19151963..19155044plastid ribosomal protein L19 precursor, putative
LOC_Os02g32410OsAffx.24538.1.S1_at11/112+19156989..19157591hypothetical protein
LOC_Os02g32420OsAffx.2829.1.S1_at11/112+19160680..19162080expressed protein
LOC_Os02g32420OsAffx.2829.1.S1_x_at11/112+19160680..19162080expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009102biological_processbiotin biosynthesis
GO:0009860biological_processpollen tube growth
GO:0009865biological_processpollen tube adhesion
GO:0042538biological_processhyperosmotic salinity response
GO:0005739cellular_componentmitochondrion
GO:0003867molecular_function4-aminobutyrate transaminase activity
GO:0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
GO:0004587molecular_functionornithine-oxo-acid transaminase activity
GO:0008453molecular_functionalanine-glyoxylate transaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29532.2.S1_x_at--1156--3931Chr02:19136799..19136823 (25 bp)
CGGCTTGGCTTTTATAGGTGGAGAA
LOC_Os02g32390
OsAffx.29532.2.S1_x_at--60--5911Chr02:19136864..19136888 (25 bp)
GAGCTCGGCTGTCGCGTGTGGTCAA
LOC_Os02g32390
OsAffx.29532.2.S1_x_at--91--7596Chr11:3610530..3610554 (25 bp)
GGGCTCTGCCCATGCCATTCTGGGA
NONE
OsAffx.29532.2.S1_x_at--351--9192Chr11:3610579..3610600 (22 bp)
TGCCTCCGGGAGTTGGACGCACACG
NONE
OsAffx.29532.2.S1_x_at--653--3291Chr02:19137048..19137072 (25 bp)
CACACGACTTGGAGCGGCCGGGCAT
LOC_Os02g32390
OsAffx.29532.2.S1_x_at--1127--8531Chr02:19138176..19138200 (25 bp)
TGGAGTCTGGACTCGAATTTCGAAG
LOC_Os02g32390
OsAffx.29532.2.S1_x_at--349--4114Chr11:5948982..5949476 (25 bp)
CGAATTTCGAAGTCGATACTCGGTT
NONE
OsAffx.29532.2.S1_x_at--175--7211Chr02:19138200..19138224 (25 bp)
GTCGATACTCGGTTTTGGGAGAATA
LOC_Os02g32390
OsAffx.29532.2.S1_x_at--835--5972Chr08:22158145..22158169 (25 bp)
GAGAACAATATTCGGAGACGAGTCA
NONE
OsAffx.29532.2.S1_x_at--443--19116Chr08:23397283..23397307 (25 bp)
ACTTGGGAGTTTGAGTTTGACTACT
NONE
OsAffx.29532.2.S1_x_at--334--6851Chr02:19138314..19138338 (25 bp)
GTTTGACTACTTGATGAGATATGCG
LOC_Os02g32390
Target Sequence 
CGGCTTGGCTTTTATAGGTGGAGAAGAGGCGGTTTAGTAGGGGGAACCGACTTAGATGGTCAAGGGAGCTCGGCTGTCGC
GTGTGGTCAAGGTGGGGGCGGCGAACTTGGCAGTCACGGGCGGCAGAGGGGGGGTCGATGGTGCCTGTCGGGGAAAAAGC
AAAAAGGGGAGGGAGGAAAGGGGGCTCTGCCCATGCCATTCTGGGAAAAAGGAGGAGGGAGAGAGAGCTCTGCCTCCGGG
AGTTGGACGCACACGACTTGGAGCGGCCGGGCATGCGGCAACAGGGCACGGGCGGCATCTGGACGGACGCGGCGACGACT
GAGCGCGGCGACCGACCGAGCGTGGGTTGGAGTCTGGACTCGAATTTCGAAGTCGATACTCGGTTTTGGGAGAATAGAAA
GGAGTCAAGGAAGAGAACAATATTCGGAGACGAGTCAAAGGGAGATGGATAATTTAGAGAAAGAGAGTGTAACTTGGGAG
TTTGAGTTTGACTACTTGATGAGATATGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29532.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis