Browse Element(s) Details


OsAffx.29554.1.S1_at

Description tigr:9636.m03646
TID=OsAffx.29554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3630011/11hypothetical protein
LOC_Os02g302701/11hypothetical protein
LOC_Os04g017501/11hypothetical protein
LOC_Os05g414101/11hypothetical protein
LOC_Os08g173301/11hypothetical protein
LOC_Os03g307301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36250Os.27812.2.S1_at11/118+22716534..22718174expressed protein
LOC_Os08g36250Os.52395.1.S1_x_at1/118+22716534..22718174expressed protein
LOC_Os08g36260OsAffx.25936.7.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.1.S1_s_at10/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.2.S1_x_at4/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36260OsAffx.25936.5.S1_x_at2/118+22719669..22722707transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36270NANA8+22724338..22724610hypothetical protein
LOC_Os08g36280Os.10827.1.S1_x_at11/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36280Os.46055.2.S1_x_at5/118+22725219..22728491transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36290OsAffx.19542.3.S1_x_at3/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290Os.36647.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36290OsAffx.21754.1.S1_x_at1/118+22731500..22737381retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g36300OsAffx.29554.1.S1_at11/118+22738985..22739591hypothetical protein
LOC_Os08g36310Os.5179.1.A1_at11/118+22743259..22744959Cytochrome P450 family protein, expressed
LOC_Os08g36320Os.12724.1.S1_a_at11/118+22745831..22750106Glutamate decarboxylase, putative, expressed
LOC_Os08g36330OsAffx.17357.1.S1_at8/118+22754798..22759753DNA polymerase epsilon subunit B family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29554.1.S1_at--1026--6251Chr08:22739535..22739559 (25 bp)
GATGGGATCAACGATACTGTTTGGC
LOC_Os08g36300
OsAffx.29554.1.S1_at--583--377Chr05:24165050..24165069 (20 bp)
ATCAACGATACTGTTTGGCAGTACA
LOC_Os05g41410
OsAffx.29554.1.S1_at--516--8271Chr08:22739513..22739537 (25 bp)
GGCAGTACAGGATATGCGGGTCAAC
LOC_Os08g36300
OsAffx.29554.1.S1_at--1027--3471Chr08:22739506..22739530 (25 bp)
CAGGATATGCGGGTCAACATGATGG
LOC_Os08g36300
OsAffx.29554.1.S1_at--876--1352Chr04:26469284..26469366 (25 bp)
AGAGCAAACGCTATGGTGTCTACGG
NONE
OsAffx.29554.1.S1_at--500--7871Chr08:22739245..22739323 (25 bp)
GGTTTCTCTTCGTGTCTGATCAAGT
LOC_Os08g36300
OsAffx.29554.1.S1_at--793--3754Chr08:10598075..10598153 (25 bp)
CTCTTCGTGTCTGATCAAGTCAAAT
LOC_Os08g17330
OsAffx.29554.1.S1_at--751--2271Chr08:22739213..22739237 (25 bp)
AAAGACGGTAGATAGAGTTGAACAT
LOC_Os08g36300
OsAffx.29554.1.S1_at--855--2733Chr03:15930886..15931082 (25 bp)
AAGAAGTTACAGAGATAGCATAGTC
NONE
OsAffx.29554.1.S1_at--1050--6031Chr08:22739064..22739088 (25 bp)
GAGATAGCATAGTCTCTTCAAGGCG
LOC_Os08g36300
OsAffx.29554.1.S1_at--666--3951Chr08:22739038..22739062 (25 bp)
CGGGTCTTGGCGCAGGCTCGTCGGG
LOC_Os08g36300
Target Sequence 
GATGGGATCAACGATACTGTTTGGCAGTACAGGATATGCGGGTCAACATGATGGGGATATATGGAAATCTGCGTCACTGA
AGAGGAAGAGCAAACGCTATGGTGTCTACGGATGCGGGAAGGCGTGGATGTTGGATTTATTAGCTCGATTCATAAGACGA
CAAGGAACAAGGAAGAAAGGTTTCTCTTCGTGTCTGATCAAGTCAAATTTAAAGACGGTAGATAGAGTTGAACATGGTCT
TCGGGGAGTCTATGATGGGACAGCTAGGAAGGAATTCAATTTCGCTTGGCAAGACGACTGTGGTGATATGAGAGAAGGTG
GAGCACTATTGCAGGTGGAGTCCAGAGGAAGAAGTTACAGAGATAGCATAGTCTCTTCAAGGCGGCGGGTCTTGGCGCAG
GCTCGTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis