Browse Element(s) Details


OsAffx.29573.1.S1_at

Description tigr:9636.m03783
TID=OsAffx.29573.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ovule development aintegumenta-like protein BNM3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3764011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37600Os.49089.1.S1_at9/118+23687529..23692257anion transporter family protein, expressed
LOC_Os08g37610Os.20672.1.S2_at11/118+23701456..23711645expressed protein
LOC_Os08g37610Os.20672.1.S1_s_at10/118+23701456..23711645expressed protein
LOC_Os08g37620OsAffx.6060.1.S1_at11/118+23712144..23712565hypothetical protein
LOC_Os08g37630NANA8+23715005..23715598expressed protein
LOC_Os08g37640OsAffx.29573.1.S1_at11/118+23716817..23717281hypothetical protein
LOC_Os08g37650Os.12071.2.S1_at11/118+23717518..23720058expressed protein
LOC_Os08g37660Os.37571.1.S1_at11/118+23720379..23721523Plastocyanin-like domain containing protein, expressed
LOC_Os08g37670Os.609.3.S1_a_at11/118+23725870..23727278Plastocyanin-like domain containing protein, expressed
LOC_Os08g37680OsAffx.29574.1.S1_at11/118+23727999..23728268hypothetical protein
LOC_Os08g37690Os.53766.1.S1_at11/118+23737020..23738267expressed protein
LOC_Os08g37700Os.27730.1.S1_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700Os.27730.1.S2_at11/118+23738352..23743390RNA recognition motif family protein, expressed
LOC_Os08g37700OsAffx.30842.1.S1_at1/118+23738352..23743390RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29573.1.S1_at--601--7351Chr08:23717221..23717245 (25 bp)
GTGAATATACCGTGTTGCCATCGCG
LOC_Os08g37640
OsAffx.29573.1.S1_at--796--531Chr08:23717202..23717226 (25 bp)
ATCGCGGGATTGTTTGCCTGTTCCA
LOC_Os08g37640
OsAffx.29573.1.S1_at--301--3571Chr08:23717156..23717180 (25 bp)
CATACGCGCAGCCACATTACAAGTG
LOC_Os08g37640
OsAffx.29573.1.S1_at--841--8571Chr08:23717133..23717157 (25 bp)
TGGTACAAGCAAGAGCCCGACGGCA
LOC_Os08g37640
OsAffx.29573.1.S1_at--260--5751Chr08:23717115..23717139 (25 bp)
GACGGCACAGCTTGCAAGAGCTCCA
LOC_Os08g37640
OsAffx.29573.1.S1_at--891--5731Chr08:23717065..23717089 (25 bp)
GACGGCTCACACGACGACTTCTTGG
LOC_Os08g37640
OsAffx.29573.1.S1_at--613--5691Chr08:23717050..23717074 (25 bp)
GACTTCTTGGCAGCAGTGGTGACAC
LOC_Os08g37640
OsAffx.29573.1.S1_at--442--5631Chr08:23717030..23717054 (25 bp)
GACACTGGCGATGCAAGTGCAACAA
LOC_Os08g37640
OsAffx.29573.1.S1_at--1085--2491Chr08:23716987..23717011 (25 bp)
AACATTGATAACACCTCACTCGAGC
LOC_Os08g37640
OsAffx.29573.1.S1_at--108--8331Chr08:23716954..23716978 (25 bp)
GGCTCCAACTCCGTGTACAATAGGG
LOC_Os08g37640
OsAffx.29573.1.S1_at--128--8751Chr08:23716941..23716965 (25 bp)
TGTACAATAGGGACGGCGGCTACAT
LOC_Os08g37640
Target Sequence 
GTGAATATACCGTGTTGCCATCGCGGGATTGTTTGCCTGTTCCACACGTACCCGGCCACCTCACCCATACGCGCAGCCAC
ATTACAAGTGGTACAAGCAAGAGCCCGACGGCACAGCTTGCAAGAGCTCCACCGTCTCAACCTCGGGGCTACCACCGACG
GCTCACACGACGACTTCTTGGCAGCAGTGGTGACACTGGCGATGCAAGTGCAACAACAACAACACGACCTCGTCAACATT
GATAACACCTCACTCGAGCACAGCACCGGCTCCAACTCCGTGTACAATAGGGACGGCGGCTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis