Browse Element(s) Details


OsAffx.29613.1.S1_at

Description tigr:9636.m04141
TID=OsAffx.29613.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY057743 AT3g42630T12K4_80
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4087011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40830Os.52026.3.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.10417.1.S1_at11/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40830Os.52026.2.S1_at9/118+25697845..25711723Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os08g40840OsAffx.17444.1.S1_at11/118+25712545..25715139Exo70 exocyst complex subunit family protein
LOC_Os08g40850Os.14971.1.S1_at11/118+25715842..25720263Mitochondrial carrier protein, expressed
LOC_Os08g40860Os.37268.1.S1_at11/118+25720886..25724289pseudouridine synthase family protein, putative, expressed
LOC_Os08g40870OsAffx.29613.1.S1_at11/118+25724317..25725498pentatricopeptide, putative, expressed
LOC_Os08g40880Os.10684.1.S1_at11/118+25726174..25732019oligouridylate-binding protein, putative, expressed
LOC_Os08g40890Os.49085.1.S2_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40890Os.49085.1.S1_at11/118+25734243..25737434spermidine synthase, putative, expressed
LOC_Os08g40900Os.48218.1.S1_at11/118+25737874..25744837Auxin response factor family protein, expressed
LOC_Os08g40900Os.48218.1.S2_at9/118+25737874..25744837Auxin response factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29613.1.S1_at--458--5171Chr08:25724834..25724858 (25 bp)
GCAAGTACTACAAGCTCGGCGAGTT
LOC_Os08g40870
OsAffx.29613.1.S1_at--162--3652Chr05:6465847..6465871 (25 bp)
CTTCGCCGCCAACTTCAAGATGAAG
NONE
OsAffx.29613.1.S1_at--8--4771Chr08:25724716..25724740 (25 bp)
GCTGCAGCGCGCGTTCCTGGACATG
LOC_Os08g40870
OsAffx.29613.1.S1_at--68--7251Chr08:25724643..25724667 (25 bp)
GTCGCCTTCTCCAAGATGTGCATGT
LOC_Os08g40870
OsAffx.29613.1.S1_at--713--1311Chr08:25724630..25724654 (25 bp)
AGATGTGCATGTTCTGGGACCTCCA
LOC_Os08g40870
OsAffx.29613.1.S1_at--365--1851Chr08:25724556..25724580 (25 bp)
ACGCACGGTTGCTTCGTCGACGCCT
LOC_Os08g40870
OsAffx.29613.1.S1_at--77--5172Chr10:6265234..6265353 (25 bp)
GCAACCTCAACTTCGCGTTCGATCG
NONE
OsAffx.29613.1.S1_at--710--2511Chr08:25724502..25724526 (25 bp)
AACTTCGCGTTCGATCGGTTGGGCG
LOC_Os08g40870
OsAffx.29613.1.S1_at--348--4671Chr08:25724371..25724395 (25 bp)
GCGGTGGACGTATTACAAGTTGCTC
LOC_Os08g40870
OsAffx.29613.1.S1_at--784--6871Chr08:25724362..25724386 (25 bp)
GTATTACAAGTTGCTCGGCGTCTAC
LOC_Os08g40870
OsAffx.29613.1.S1_at--555--9451Chr08:25724348..25724372 (25 bp)
TCGGCGTCTACCTGAGGAAGCAGCA
LOC_Os08g40870
Target Sequence 
GCAAGTACTACAAGCTCGGCGAGTTCGTCACCGACGTCGGCCTCGGCCGCCGTGCTGGCGGCAACCTGCTCTGGAACCTC
TACCTCCTCTCCTTCGCCGCCAACTTCAAGATGAAGTCGCTGCAGCGCGCGTTCCTGGACATGGTCGCCGCCGGGTTCAC
GCCGGACCTCACCACCTTCAACCTCCGCGCCGTCGCCTTCTCCAAGATGTGCATGTTCTGGGACCTCCACCTCACCGCCG
ACCACATGCGCCGCGACGGCGTCGCGCCGGACCTCGTCACGCACGGTTGCTTCGTCGACGCCTACCTGGAGCGCCGCCTC
GCCCGCAACCTCAACTTCGCGTTCGATCGGTTGGGCGCCGGCGAGCCCGTCGTGGCCACGGACGCCGTCGTGTTCGAGGC
GTTCGGCAAGGGGGGATTCCACGCGAGCTCCGAGGTGTTGCTCGAGGCCACCGGCGGCGAGCGGCGGTGGACGTATTACA
AGTTGCTCGGCGTCTACCTGAGGAAGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis