Browse Element(s) Details


OsAffx.29632.1.S1_at

Description tigr:9636.m04310
TID=OsAffx.29632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycerophosphoryl diester phosphodiesterase family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4239010/11glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42350Os.10401.1.S1_s_at11/118+26593109..26595951MtN3/saliva family protein, expressed
LOC_Os08g42360OsAffx.17473.1.S1_at11/118+26608089..26609857hypothetical protein
LOC_Os08g42370Os.26668.1.S1_at11/118+26612104..26615596DHHC zinc finger domain containing protein, expressed
LOC_Os08g42380Os.13952.1.S1_at6/118+26617093..26618170small zinc finger, putative, expressed
LOC_Os08g42390OsAffx.29632.1.S1_at10/118+26618527..26621404glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os08g42400Os.11141.1.S1_at11/118+26633973..26637492No apical meristem protein, expressed
LOC_Os08g42410Os.18710.1.S1_at10/118+26645139..26650451Pyruvate dehydrogenase E1 component beta subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29632.1.S1_at--664--6091Chr08:26620000..26620024 (25 bp)
GAGTCAACTTGACCGTGCGCTTCAA
LOC_Os08g42390
OsAffx.29632.1.S1_at--264--9131Chr08:26620015..26620038 (24 bp)
TGCGCTTCAAGCTGTATTGCAAGTT
LOC_Os08g42390
OsAffx.29632.1.S1_at--331--10091Chr08:26620168..26620192 (25 bp)
TAGGCCTGTATTTTTCTCAACCTTC
LOC_Os08g42390
OsAffx.29632.1.S1_at--669--2631Chr08:26620186..26620210 (25 bp)
AACCTTCCATCCTGATGCGGCAAGG
LOC_Os08g42390
OsAffx.29632.1.S1_at--502--4891NONE
GCTTATATCCTGTACTCTTCTTAAC
NONE
OsAffx.29632.1.S1_at--99--9671Chr08:26620932..26620956 (25 bp)
TCACTTGATGAAGCTATCCGGGTCT
LOC_Os08g42390
OsAffx.29632.1.S1_at--673--551Chr08:26620947..26620971 (25 bp)
ATCCGGGTCTGCCTAGAGTACGAGT
LOC_Os08g42390
OsAffx.29632.1.S1_at--610--10471Chr08:26621004..26621028 (25 bp)
TTAAAGAATCCCTCTGCAGTCCTTA
LOC_Os08g42390
OsAffx.29632.1.S1_at--32--2431Chr08:26621033..26621057 (25 bp)
AAAAGAGTCCAACCTTGCACTTCTG
LOC_Os08g42390
OsAffx.29632.1.S1_at--1052--2051Chr08:26621051..26621074 (24 bp)
ACTTCTGACCTATGGGCAGCTCAAT
LOC_Os08g42390
OsAffx.29632.1.S1_at--910--8211Chr08:26621260..26621284 (25 bp)
GGCAGATTTCAGTAAACCAGTCCTC
LOC_Os08g42390
Target Sequence 
GAGTCAACTTGACCGTGCGCTTCAAGCTGTATTGCAAGTTGTTTCTCAGTATGCAAGCAATAGGCCTGTATTTTTCTCAA
CCTTCCATCCTGATGCGGCAAGGATTATGAGGGAACTTCAGAGCTTATATCCTGTACTCTTCTTAACAGAAGGAGGAACA
GCTCAACACAAAGATTCAAGAAGGAACTCACTTGATGAAGCTATCCGGGTCTGCCTAGAGTACGAGTTGCATGGACTTGT
ATCAGAGGTAAGAGGGGTTTTAAAGAATCCCTCTGCAGTCCTTAGAGCAAAAGAGTCCAACCTTGCACTTCTGACCTATG
GGCAGCTCAATAATGTGTGGGAGGCTGTGTACATCCAGTATTTGATGGGCGTAAATGGCGTTATTGTTGATCTAGTGGAG
GAGATCTCAAATGCTGTGGCAGATTTCAGTAAACCAGTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis