Browse Element(s) Details


OsAffx.29683.1.S1_at

Description tigr:9637.m00073
TID=OsAffx.29683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0231010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02270Os.9823.1.S1_at11/119+919575..925013cyclase family protein, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_s_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284Os.5510.1.S1_at11/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02284OsAffx.17530.1.S1_at1/119+926068..933049DNA-directed RNA polymerase II 36 kDa polypeptide A, putative, expressed
LOC_Os09g02300Os.47346.1.A1_x_at11/119+936054..937276expressed protein
LOC_Os09g02310OsAffx.29683.1.S1_at10/119+946473..947054hypothetical protein
LOC_Os09g02320OsAffx.10222.1.S1_x_at1/119+952032..953641hypothetical protein
LOC_Os09g02330OsAffx.17531.1.S1_at11/119+956941..957726hypothetical protein
LOC_Os09g02340OsAffx.29685.1.S1_at9/119+959331..961386hypothetical protein
LOC_Os09g02350OsAffx.29686.1.S1_at11/119+966405..966752hypothetical protein
LOC_Os09g02360Os.47738.1.S1_at11/119+968784..970670Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29683.1.S1_at--1152--10351Chr09:946984..947008 (25 bp)
TTTTTCCCTTGCTTTGTCAAGTCCA
LOC_Os09g02310
OsAffx.29683.1.S1_at--41--3691Chr09:946973..946997 (25 bp)
CTTTGTCAAGTCCACTTCGATAGCG
LOC_Os09g02310
OsAffx.29683.1.S1_at--309--10811Chr09:946971..946995 (25 bp)
TTGTCAAGTCCACTTCGATAGCGAA
LOC_Os09g02310
OsAffx.29683.1.S1_at--880--7071Chr09:946969..946993 (25 bp)
GTCAAGTCCACTTCGATAGCGAAGA
LOC_Os09g02310
OsAffx.29683.1.S1_at--735--7271Chr09:946964..946988 (25 bp)
GTCCACTTCGATAGCGAAGAGATCG
LOC_Os09g02310
OsAffx.29683.1.S1_at--1011--5351Chr09:946949..946973 (25 bp)
GAAGAGATCGAGATAGTGGAAGCAA
LOC_Os09g02310
OsAffx.29683.1.S1_at--63--3491Chr09:946914..946938 (25 bp)
CAGGAGAGGAGCAAAGCGTTTGCTT
LOC_Os09g02310
OsAffx.29683.1.S1_at--627--2351Chr09:946902..946926 (25 bp)
AAAGCGTTTGCTTTGTGGACCAACA
LOC_Os09g02310
OsAffx.29683.1.S1_at--418--1571Chr09:946900..946924 (25 bp)
AGCGTTTGCTTTGTGGACCAACAAG
LOC_Os09g02310
OsAffx.29683.1.S1_at--145--4011NONE
CGTTTGCTTTGTGGACCAACAAGAT
NONE
OsAffx.29683.1.S1_at--1137--4871Chr09:946506..946917 (25 bp)
GCTTTGTGGACCAACAAGATGTATA
LOC_Os09g02310
Target Sequence 
TTTTTCCCTTGCTTTGTCAAGTCCACTTCGATAGCGAAGAGATCGAGATAGTGGAAGCAAAAAATTTGAGCAGGAGAGGA
GCAAAGCGTTTGCTTTGTGGACCAACAAGATGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis