Browse Element(s) Details


OsAffx.29697.1.S1_at

Description tigr:9637.m00131
TID=OsAffx.29697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0288010/11hypothetical protein
LOC_Os05g256101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02840NANA9+1331084..1336147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02850OsAffx.17544.1.S1_at11/119+1336310..1337153hypothetical protein
LOC_Os09g02860OsAffx.29696.1.S1_at11/119+1340563..1341235hypothetical protein
LOC_Os09g02870Os.47463.1.S1_x_at6/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02870Os.14491.2.S1_x_at4/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02880OsAffx.29697.1.S1_at10/119+1351117..1352234hypothetical protein
LOC_Os09g02890OsAffx.17545.1.S1_at11/119+1353909..1355501AC transposase, putative
LOC_Os09g02900NANA9+1356426..1358374transposon protein, putative, Mutator sub-class
LOC_Os09g02910OsAffx.6157.2.S1_at10/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.1.S1_x_at4/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.2296.1.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.2.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.7706.1.S1_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02920OsAffx.29698.1.S1_at11/119+1371217..1373733hypothetical protein
LOC_Os09g02920OsAffx.22250.2.S1_x_at1/119+1371217..1373733hypothetical protein
LOC_Os09g02930NANA9+1374529..1376209retrotransposon protein, putative, unclassified
LOC_Os09g02940OsAffx.16111.1.S1_at1/119+1376970..1377983retrotransposon protein, putative, unclassified
LOC_Os09g02940OsAffx.20615.1.S1_at1/119+1376970..1377983retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29697.1.S1_at--899--4431Chr09:1351165..1351187 (23 bp)
GCCATCATCGGCCTGTTGGACAGAT
LOC_Os09g02880
OsAffx.29697.1.S1_at--651--4471NONE
GCCTGTTGGACAGATCAGTTTACGA
NONE
OsAffx.29697.1.S1_at--1005--6551Chr09:1351768..1351792 (25 bp)
GATTCTGAATGAGGCTGTGCAGCAC
LOC_Os09g02880
OsAffx.29697.1.S1_at--1034--8331Chr09:1351780..1351804 (25 bp)
GGCTGTGCAGCACTATCCCCATGAT
LOC_Os09g02880
OsAffx.29697.1.S1_at--568--3491Chr09:1351799..1351823 (25 bp)
CATGATTTCCCACAGATTCCGTATG
LOC_Os09g02880
OsAffx.29697.1.S1_at--201--1011Chr09:1351932..1351956 (25 bp)
AGGTATCTATTTGTGGACTTTGGTT
LOC_Os09g02880
OsAffx.29697.1.S1_at--958--8511Chr09:1351945..1351969 (25 bp)
TGGACTTTGGTTTTCCTAGCAGGAT
LOC_Os09g02880
OsAffx.29697.1.S1_at--587--5011Chr09:1351963..1351987 (25 bp)
GCAGGATGGGATTTCTTGCACCGTA
LOC_Os09g02880
OsAffx.29697.1.S1_at--695--7653Chr09:1351970..1351994 (25 bp)
GGGATTTCTTGCACCGTACCACATG
LOC_Os09g02880
OsAffx.29697.1.S1_at--103--9831Chr09:1352000..1352024 (25 bp)
TAACACAGGGATCGACTGGGACGAA
LOC_Os09g02880
OsAffx.29697.1.S1_at--339--8911Chr09:1352048..1352072 (25 bp)
TGAGAAGAGCACTTCAACCATTGTC
LOC_Os09g02880
Target Sequence 
GCCATCATCGGCCTGTTGGACAGATCAGTTTACGATCAAAGGATTCTGAATGAGGCTGTGCAGCACTATCCCCATGATTT
CCCACAGATTCCGTATGGAAGGTATCTATTTGTGGACTTTGGTTTTCCTAGCAGGATGGGATTTCTTGCACCGTACCACA
TGTACGGTAACACAGGGATCGACTGGGACGAAGAGGAGCGGCGCCACTCGAAGGATGAGAAGAGCACTTCAACCATTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis