Browse Element(s) Details


OsAffx.29734.1.S1_at

Description tigr:9637.m00413
TID=OsAffx.29734.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0659011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g06540OsAffx.2022.1.S1_at1/119+3108254..3110685retrotransposon protein, putative, unclassified
LOC_Os09g06550NANA9+3113277..3114272retrotransposon protein, putative, unclassified
LOC_Os09g06560Os.53771.1.A2_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06560Os.53771.1.A1_at11/119+3117920..3124131transducin family protein, putative, expressed
LOC_Os09g06570Os.50216.1.S1_at11/119+3125678..3126160expressed protein
LOC_Os09g06580OsAffx.24386.2.S1_at11/119+3128207..3129193expressed protein
LOC_Os09g06590OsAffx.29734.1.S1_at11/119+3130087..3131619hypothetical protein
LOC_Os09g06600NANA9+3132719..3135097retrotransposon protein, putative, unclassified
LOC_Os09g06610NANA9+3135411..3136990retrotransposon protein, putative, unclassified
LOC_Os09g06620OsAffx.17579.1.S1_at11/119+3138079..3139353F-box domain containing protein, expressed
LOC_Os09g06634Os.10321.1.S1_at11/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed
LOC_Os09g06634OsAffx.27865.1.S1_x_at2/119+3140918..3146413transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29734.1.S1_at--798--4531Chr09:3131041..3131065 (25 bp)
GCCCTATTGGTGGAAATCGCCGATC
LOC_Os09g06590
OsAffx.29734.1.S1_at--185--6411Chr09:3131062..3131086 (25 bp)
GATCGGCTCAATGCCTCTTTGGACA
LOC_Os09g06590
OsAffx.29734.1.S1_at--128--8151Chr09:3131082..3131142 (25 bp)
GGACACCCTTGAGATCCAGGATCGA
LOC_Os09g06590
OsAffx.29734.1.S1_at--1028--10391Chr09:3131155..3131179 (25 bp)
TTATCCAACAAGATAGCCTCGGCCG
LOC_Os09g06590
OsAffx.29734.1.S1_at--461--5971Chr09:3131197..3131221 (25 bp)
GAGAAGCAATGTCATCGGGCCACAA
LOC_Os09g06590
OsAffx.29734.1.S1_at--1074--10231Chr09:3131253..3131277 (25 bp)
TTTGGATGCCACGATCGACACTTGC
LOC_Os09g06590
OsAffx.29734.1.S1_at--1059--431Chr09:3131305..3131329 (25 bp)
ATCTTAGATCAACTCGCTATTGCCC
LOC_Os09g06590
OsAffx.29734.1.S1_at--334--1851Chr09:3131345..3131369 (25 bp)
ACGAACTTGCCACTTTGCAGGTGAA
LOC_Os09g06590
OsAffx.29734.1.S1_at--301--9031Chr09:3131393..3131417 (25 bp)
TGCAGCAATGCCGAGCCGATATATT
LOC_Os09g06590
OsAffx.29734.1.S1_at--1020--1011Chr09:3131467..3131491 (25 bp)
AGGTCTAAACTGAAAGCCTCCCTCA
LOC_Os09g06590
OsAffx.29734.1.S1_at--764--8311Chr09:3131499..3131523 (25 bp)
GGCTAATCTAGTCAAGTCCTCCAAA
LOC_Os09g06590
Target Sequence 
GCCCTATTGGTGGAAATCGCCGATCGGCTCAATGCCTCTTTGGACACCCTTGAGATCCAGGATCGAATTCCAGATGATTT
ATCCAACAAGATAGCCTCGGCCGCCTTCCTGGAGCAATATGAGAAGCAATGTCATCGGGCCACAAAGAGGATAGCCGATC
CTCACGAAGCCCAGGCTTTGGATGCCACGATCGACACTTGCCAGAAGCAAATAATTGAAGACAAAGCAATCTTAGATCAA
CTCGCTATTGCCCTATCGCCGATGGAGCACGAACTTGCCACTTTGCAGGTGAAAGAGGCAGCACTGGTCGAAGAGCTGCA
GCAATGCCGAGCCGATATATTGTCTGTAGAAGGAAAGATCAAGAACTTGCCACATGCCACCGAGGAGCAAAGGTCTAAAC
TGAAAGCCTCCCTCAAACACTTGGCTAATCTAGTCAAGTCCTCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29734.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis