Browse Element(s) Details


OsAffx.29766.1.S1_x_at

Description tigr:9637.m00631
TID=OsAffx.29766.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0860011/11GRF zinc finger family protein
LOC_Os03g4158011/11GRF zinc finger family protein
LOC_Os09g0315011/11GRF zinc finger family protein
LOC_Os11g416302/11GRF zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08540NANA9+4453469..4459072retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08550NANA9+4461359..4463095F-box domain containing protein
LOC_Os09g08560OsAffx.6209.1.S1_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.6209.1.S1_x_at11/119+4465499..4465945hypothetical protein
LOC_Os09g08560OsAffx.12971.1.S1_x_at1/119+4465499..4465945hypothetical protein
LOC_Os09g08570NANA9+4466902..4467663hypothetical protein
LOC_Os09g08580OsAffx.6210.1.S1_at11/119+4473924..4475106expressed protein
LOC_Os09g08590NANA9+4477192..4480656transposon protein, putative, Mutator sub-class
LOC_Os09g08600OsAffx.29766.1.S1_x_at11/119+4481037..4481798GRF zinc finger family protein
LOC_Os09g08610OsAffx.29767.1.S1_at11/119+4487402..4488259hypothetical protein
LOC_Os09g08620Os.50523.1.S1_at10/119+4501977..4505802F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29766.1.S1_x_at--320--9173Chr09:1508733..1508757 (25 bp)
TGCCCCTCATGCAATGTGAAGACCA
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--805--4533Chr09:1508734..1508758 (25 bp)
GCCCCTCATGCAATGTGAAGACCAT
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--885--4193Chr09:1508735..1508759 (25 bp)
CCCCTCATGCAATGTGAAGACCATC
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--840--8993Chr09:1508749..1508773 (25 bp)
TGAAGACCATCGTGAGATGCACAGC
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--31--10373Chr09:1508800..1508824 (25 bp)
TTTTTTACACTTGTCCTGACCATGA
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--301--10373Chr09:1508801..1508825 (25 bp)
TTTTTACACTTGTCCTGACCATGAG
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--991--10333Chr09:1508803..1508825 (23 bp)
TTTACACTTGTCCTGACCATGAGAA
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--733--9854Chr09:1508805..1508825 (21 bp)
TACACTTGTCCTGACCATGAGAAAG
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--566--2074Chr09:1508808..1508923 (25 bp)
ACTTGTCCTGACCATGAGAAAGATG
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--1034--6233Chr09:1509001..1509025 (25 bp)
GATGGCACATATGGGAAGACTGCTC
LOC_Os09g03150
OsAffx.29766.1.S1_x_at--62--8513Chr09:1509003..1509027 (25 bp)
TGGCACATATGGGAAGACTGCTCAG
LOC_Os09g03150
Target Sequence 
TGCCCCTCATGCAATGTGAAGACCATCGTGAGATGCACAGCNAAGACAGATGCTAATNNAGGCCGNATTTTTTACACTTG
TCCTGACCATGAGAAAGATGGANCTGGGTGTAACTTTTGGTATTGGGAAGAAGGNTACATCAATTATCTGAAGAGGAATG
GCTTCATTGNTGGANAAGATGGCACATATGGGAAGACTGCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29766.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis