Browse Element(s) Details


OsAffx.29772.1.S1_at

Description tigr:9637.m00660
TID=OsAffx.29772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L5, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0889010/11Mitochondrial 60S ribosomal protein L5, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08860NANA9+4680329..4683252retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08870NANA9+4683578..4689688retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08880OsAffx.30475.3.S1_s_at5/119+4691153..4692007ATP synthase alpha chain, putative
LOC_Os09g08890OsAffx.32305.1.S1_x_at11/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.29772.1.S1_at10/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08890OsAffx.32304.1.S1_at2/119+4703612..4706429Mitochondrial 60S ribosomal protein L5, putative
LOC_Os09g08900Os.27691.1.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08900Os.27691.2.S1_x_at1/119+4714030..4719783retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08910OsAffx.26050.4.S1_at11/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed
LOC_Os09g08910OsAffx.32306.1.S1_x_at7/119+4727302..4729884ATP synthase alpha chain, mitochondrial, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005762cellular_componentmitochondrial large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29772.1.S1_at--340--7591Chr09:4705608..4705873 (25 bp)
GGGAAACTAACATCTCGAGGTTCTT
LOC_Os09g08890
OsAffx.29772.1.S1_at--872--6952Chr12:13381916..13381939 (24 bp)
GTAGCAACCACCAAACCAATAGAAC
NONE
OsAffx.29772.1.S1_at--49--5511NONE
GAACAAAGTTATCCCTTGCTAGCTT
NONE
OsAffx.29772.1.S1_at--12--551Chr09:4704941..4704965 (25 bp)
ATCCCTTGCTAGCTTGTATTTGTGA
LOC_Os09g08890
OsAffx.29772.1.S1_at--813--5473Chr10:19390976..19390997 (22 bp)
GAACTAGTGGTTACAGCGAATGAGC
NONE
OsAffx.29772.1.S1_at--699--5272Chr12:20436173..20436197 (25 bp)
GAATGAGCAATCTTGTGTATATCCA
NONE
OsAffx.29772.1.S1_at--122--3212Chr12:20435591..20435614 (24 bp)
CAAGGCTGGTGATGTGCCACTGTAT
NONE
OsAffx.29772.1.S1_at--387--10032Chr12:20435548..20435572 (25 bp)
TAGAAGTGCTTTCCTTCACGCTGAG
NONE
OsAffx.29772.1.S1_at--243--1832Chr12:20435531..20435555 (25 bp)
ACGCTGAGCGTGAACTCTCGATTTC
NONE
OsAffx.29772.1.S1_at--144--5471Chr09:4703681..4703705 (25 bp)
GAACTCTCGATTTCGCTATACGTGG
LOC_Os09g08890
OsAffx.29772.1.S1_at--624--5672Chr12:20435483..20435507 (25 bp)
GACATCAATCAGCTAAGTCCGTCTG
NONE
Target Sequence 
GGGAAACTAACATCTCGAGGTTCTTTGATGGGCATAAAGAAATTGTCTTGGTAGCAACCACCAAACCAATAGAACAAAGT
TATCCCTTGCTAGCTTGTATTTGTGAAGGATATGTTAATCTGGGTCAAAGATACTTGTTCTCGATGAGTGAAGATTCAGT
TCTAGAACTAGTGGTTACAGCGAATGAGCAATCTTGTGTATATCCAAGCGCTGAAAAGACAGCATTGAACGAGAAGAGAA
CTAAGGCAAGGCTGGTGATGTGCCACTGTATGGGGAGCTCTGAGAAAGTAGAAGTGCTTTCCTTCACGCTGAGCGTGAAC
TCTCGATTTCGCTATACGTGGAAGATTGCTTATGACATCAATCAGCTAAGTCCGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis