Browse Element(s) Details


OsAffx.29774.1.S1_at

Description tigr:9637.m00677
TID=OsAffx.29774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0926011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09220OsAffx.17610.1.S1_at11/119+4932507..4941200Protein kinase domain containing protein, expressed
LOC_Os09g09230OsAffx.17611.1.S1_at11/119+4942208..4942863cinnamoyl CoA reductase, putative
LOC_Os09g09240NANA9+4948220..4954135retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09250OsAffx.21897.5.S1_x_at4/119+4954357..4957281retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09260OsAffx.29774.1.S1_at11/119+4960788..4961434hypothetical protein
LOC_Os09g09270OsAffx.29775.1.S1_at10/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09270OsAffx.29033.1.S1_at1/119+4961897..4962715Dihydroflavonol-4-reductase, putative
LOC_Os09g09279Os.54774.1.S1_x_at2/119+4965329..4966709NA
LOC_Os09g09279Os.54774.1.S1_at2/119+4965329..4966709NA
LOC_Os09g09290Os.40360.1.S1_x_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40360.1.S1_at11/119+4971698..4979074expressed protein
LOC_Os09g09290Os.40855.5.S1_x_at1/119+4971698..4979074expressed protein
LOC_Os09g09310NANA9+4982025..4982288hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29774.1.S1_at--220--9791Chr09:4960825..4960849 (25 bp)
TAAGCTGTCCACTGTTCCTGTTAGA
LOC_Os09g09260
OsAffx.29774.1.S1_at--859--1951Chr09:4960835..4960857 (23 bp)
ACTGTTCCTGTTAGACAAGTACGAA
LOC_Os09g09260
OsAffx.29774.1.S1_at--896--2831Chr09:4960851..4961126 (25 bp)
AAGTACGAAGTCAAGGTTGCTCCAA
LOC_Os09g09260
OsAffx.29774.1.S1_at--625--2831Chr09:4961109..4961133 (25 bp)
AAGTCAAGGTTGCTCCAACAGCTCT
LOC_Os09g09260
OsAffx.29774.1.S1_at--317--2491Chr09:4961125..4961149 (25 bp)
AACAGCTCTCGTCCATAACTGTGTC
LOC_Os09g09260
OsAffx.29774.1.S1_at--419--7271Chr09:4961135..4961159 (25 bp)
GTCCATAACTGTGTCGAGGCTTCTA
LOC_Os09g09260
OsAffx.29774.1.S1_at--986--9371Chr09:4961148..4961172 (25 bp)
TCGAGGCTTCTATTTGGGTCCATGT
LOC_Os09g09260
OsAffx.29774.1.S1_at--502--3491Chr09:4961168..4961192 (25 bp)
CATGTGTACAGCACCGTAGGAAGAC
LOC_Os09g09260
OsAffx.29774.1.S1_at--403--1391Chr09:4961189..4961213 (25 bp)
AGACGTGAAGACCACACGACCTGCA
LOC_Os09g09260
OsAffx.29774.1.S1_at--778--9111Chr09:4961222..4961246 (25 bp)
TGCTGCAGCGTTGATCACATTCTTG
LOC_Os09g09260
OsAffx.29774.1.S1_at--383--10791Chr09:4961232..4961256 (25 bp)
TTGATCACATTCTTGGTTCCCTCAA
LOC_Os09g09260
Target Sequence 
TAAGCTGTCCACTGTTCCTGTTAGACAAGTACGAAGTCAAGGTTGCTCCAACAGCTCTCGTCCATAACTGTGTCGAGGCT
TCTATTTGGGTCCATGTGTACAGCACCGTAGGAAGACGTGAAGACCACACGACCTGCACCCACGTCTGCTGCAGCGTTGA
TCACATTCTTGGTTCCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis