Browse Element(s) Details


OsAffx.29801.1.S1_at

Description tigr:9637.m00843
TID=OsAffx.29801.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1118011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11140OsAffx.25834.1.S1_at1/119+6170119..6173633hypothetical protein
LOC_Os09g11150OsAffx.11392.5.S1_at11/119+6175333..6178600hypothetical protein
LOC_Os09g11150OsAffx.11392.2.S1_x_at3/119+6175333..6178600hypothetical protein
LOC_Os09g11160OsAffx.29800.1.S1_at11/119+6183856..6185368expressed protein
LOC_Os09g11170Os.52847.1.S1_at9/119+6194158..6195917IBR domain containing protein, expressed
LOC_Os09g11180OsAffx.29801.1.S1_at11/119+6196403..6196831hypothetical protein
LOC_Os09g11190OsAffx.17640.1.S1_at11/119+6204643..6206169hypothetical protein
LOC_Os09g11200OsAffx.6231.1.S1_at11/119+6207946..6208227hypothetical protein
LOC_Os09g11210OsAffx.17641.1.S1_at11/119+6211043..6211517hypothetical protein
LOC_Os09g11220OsAffx.6468.1.S1_at8/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed
LOC_Os09g11220OsAffx.6468.1.S1_x_at4/119+6217761..6224987retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29801.1.S1_at--1115--7531Chr09:6196453..6196477 (25 bp)
GTGGCTGCTGCTGTGCACGTGGGAC
LOC_Os09g11180
OsAffx.29801.1.S1_at--1076--9552Chr09:6196500..6196524 (25 bp)
TCTTGCAGAAGAGGAACGACGTGGT
LOC_Os09g11180
OsAffx.29801.1.S1_at--794--971Chr09:6196551..6196575 (25 bp)
AGGAGCAGGAGGACTTGACGACACT
LOC_Os09g11180
OsAffx.29801.1.S1_at--204--6191Chr09:6196559..6196583 (25 bp)
GAGGACTTGACGACACTAGCGACAA
LOC_Os09g11180
OsAffx.29801.1.S1_at--600--10431Chr09:6196565..6196589 (25 bp)
TTGACGACACTAGCGACAAGGGTTA
LOC_Os09g11180
OsAffx.29801.1.S1_at--782--2111Chr09:6196571..6196595 (25 bp)
ACACTAGCGACAAGGGTTAGGGCCG
LOC_Os09g11180
OsAffx.29801.1.S1_at--230--6751Chr09:6196586..6196610 (25 bp)
GTTAGGGCCGCAGCTGCGTCACCGG
LOC_Os09g11180
OsAffx.29801.1.S1_at--411--4651Chr09:6196664..6196688 (25 bp)
GCGTCGTCTCCGCATGTATTCACCT
LOC_Os09g11180
OsAffx.29801.1.S1_at--701--4991Chr09:6196675..6196699 (25 bp)
GCATGTATTCACCTCACACCTTAAT
LOC_Os09g11180
OsAffx.29801.1.S1_at--616--3631Chr09:6196694..6196718 (25 bp)
CTTAATCCCACCTCTGATTACATGG
LOC_Os09g11180
OsAffx.29801.1.S1_at--1058--9311Chr09:6196699..6196723 (25 bp)
TCCCACCTCTGATTACATGGAGGAT
LOC_Os09g11180
Target Sequence 
GTGGCTGCTGCTGTGCACGTGGGACGTCGGCACGTCTTCCATGCATATCTTGCAGAAGAGGAACGACGTGGTGGGGACGG
ACGGCGCCATAGCTGACGAGGAGCAGGAGGACTTGACGACACTAGCGACAAGGGTTAGGGCCGCAGCTGCGTCACCGGCC
TGTGGGGCCGAGGAGGACGGGTACTCGGCGCTCGGAGAAGAGAGGAGGACGGCGTCGTCTCCGCATGTATTCACCTCACA
CCTTAATCCCACCTCTGATTACATGGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29801.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis