Browse Element(s) Details


OsAffx.29918.1.S1_at

Description tigr:9637.m01598
TID=OsAffx.29918.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MTH12.17
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1854011/11leucine-rich repeat protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g18500Os.46306.1.S1_x_at2/119+11337814..11340899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g18510NANA9+11342164..11343633hypothetical protein
LOC_Os09g18520OsAffx.6325.2.S1_at10/119+11347301..11348992oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g18530OsAffx.17773.1.S1_at11/119+11359267..11362179Protein kinase domain containing protein, expressed
LOC_Os09g18540OsAffx.29918.1.S1_at11/119+11362791..11366120leucine-rich repeat protein kinase, putative
LOC_Os09g18550OsAffx.6326.1.S1_at11/119+11369318..11371006Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os09g18560Os.52812.1.S1_at11/119+11373270..11374130hypothetical protein
LOC_Os09g18569NANA9+11380762..11381015NA
LOC_Os09g18580NANA9+11382326..11382809hypothetical protein
LOC_Os09g18594Os.27681.1.S1_a_at11/119+11386161..11395235Protein kinase domain containing protein, expressed
LOC_Os09g18594Os.27681.2.S1_at11/119+11386161..11395235Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29918.1.S1_at--29--2391Chr09:11363292..11363316 (25 bp)
AAACGATGTGTTTGACCGCTTCTGG
LOC_Os09g18540
OsAffx.29918.1.S1_at--126--1091Chr09:11363245..11363269 (25 bp)
AGTGGCTCAACATCTCTACAAACGG
LOC_Os09g18540
OsAffx.29918.1.S1_at--139--2191Chr09:11363228..11363252 (25 bp)
ACAAACGGCACTTTCATGGGTTACT
LOC_Os09g18540
OsAffx.29918.1.S1_at--853--791Chr09:11363213..11363237 (25 bp)
ATGGGTTACTACTCCGATGACCACA
LOC_Os09g18540
OsAffx.29918.1.S1_at--6--9211Chr09:11363145..11363169 (25 bp)
TGCCACTTCTGTACATCTGAACATC
LOC_Os09g18540
OsAffx.29918.1.S1_at--515--2091Chr09:11363125..11363149 (25 bp)
ACATCACTGTTCATGCAGCTTCTGT
LOC_Os09g18540
OsAffx.29918.1.S1_at--404--3411Chr09:11363036..11363060 (25 bp)
CAGCAGCAGCGTCAGTTCGAAATAT
LOC_Os09g18540
OsAffx.29918.1.S1_at--391--6711Chr09:11363022..11363046 (25 bp)
GTTCGAAATATACTCCGGCAAGGTC
LOC_Os09g18540
OsAffx.29918.1.S1_at--956--3711Chr09:11362968..11362992 (25 bp)
CTACGAGTTGTACAGCATGCAGCCA
LOC_Os09g18540
OsAffx.29918.1.S1_at--772--2671Chr09:11362932..11362956 (25 bp)
AAGCGGTCTTTACATGTTGTCCAAC
LOC_Os09g18540
OsAffx.29918.1.S1_at--988--9711Chr09:11362864..11362888 (25 bp)
TCAACGCCATCGAGATCTACTACAG
LOC_Os09g18540
Target Sequence 
AAACGATGTGTTTGACCGCTTCTGGTGGACACCAGTGTACAGCACGGAGTGGCTCAACATCTCTACAAACGGCACTTTCA
TGGGTTACTACTCCGATGACCACATCCGGGTTCCGAGAGACGTCCTCCGGACCGCGATCACGACGTCTGCCACTTCTGTA
CATCTGAACATCACTGTTCATGCAGCTTCTGTCGGTCAGTTGCCGCCTCCAACCGAGCGGGCGTACTTCCACTTCCTGCA
CTTCGCCAGCTTCGAGCAGCAGCAGCGTCAGTTCGAAATATACTCCGGCAAGGTCAAGTGGAAAAAACAGAACAACATAT
CGGTCTACGAGTTGTACAGCATGCAGCCAAGTTACAGCTCAAGCGGTCTTTACATGTTGTCCAACGTCTCGCTCGTCGCC
ACCAACGACTCCGTGCTGCCACCATTGCTCAACGCCATCGAGATCTACTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis