Browse Element(s) Details


OsAffx.29926.1.S1_at

Description tigr:9637.m01672
TID=OsAffx.29926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein 15e1.1 homolog at4g33100. (mouse-ear cress, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g197507/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19710Os.23381.1.A1_at6/119+11795029..11797947hypersensitive-induced response protein, putative, expressed
LOC_Os09g19720Os.57110.1.S1_at11/119+11798225..11799570expressed protein
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19750Os.51582.1.S2_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.56090.1.S1_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_s_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.51582.1.S1_at10/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_at7/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19760OsAffx.29927.1.S1_at11/119+11825690..11825929hypothetical protein
LOC_Os09g19769NANA9+11829099..11829284NA
LOC_Os09g19780NANA9+11836068..11836760hypothetical protein
LOC_Os09g19790Os.14152.1.S1_at11/119+11842719..11850258Peptidase family M1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29926.1.S1_at--83--3791NONE
CTGCCTCGAGAAGTTACACAACGGT
NONE
OsAffx.29926.1.S1_at--802--4451NONE
GCCTCGAGAAGTTACACAACGGTGT
NONE
OsAffx.29926.1.S1_at--45--6591Chr09:11819303..11819327 (25 bp)
GTTACACAACGGTGTAGTTGTCCTT
LOC_Os09g19750
OsAffx.29926.1.S1_at--1059--9851Chr09:11819301..11819325 (25 bp)
TACACAACGGTGTAGTTGTCCTTGC
LOC_Os09g19750
OsAffx.29926.1.S1_at--925--3291Chr09:11819299..11819323 (25 bp)
CACAACGGTGTAGTTGTCCTTGCAT
LOC_Os09g19750
OsAffx.29926.1.S1_at--36--2591Chr09:11819296..11819320 (25 bp)
AACGGTGTAGTTGTCCTTGCATTTG
LOC_Os09g19750
OsAffx.29926.1.S1_at--883--1911Chr09:11819295..11819319 (25 bp)
ACGGTGTAGTTGTCCTTGCATTTGG
LOC_Os09g19750
OsAffx.29926.1.S1_at--785--3971Chr09:11819294..11819318 (25 bp)
CGGTGTAGTTGTCCTTGCATTTGGT
LOC_Os09g19750
OsAffx.29926.1.S1_at--618--7731Chr09:11819293..11819317 (25 bp)
GGTGTAGTTGTCCTTGCATTTGGTT
LOC_Os09g19750
OsAffx.29926.1.S1_at--402--3651NONE
CTTCTTCTCGAAAAGTGAAAGCTAC
NONE
OsAffx.29926.1.S1_at--303--3651NONE
CTTCTCGAAAAGTGAAAGCTACCAG
NONE
Target Sequence 
CTGCCTCGAGAAGTTACACAACGGTGTAGTTGTCCTTGCATTTGGTTTATTGGTTTATGGAAAACAGTTGGGGAAGAATA
TTCTGGAACATCTGGAAGACAAGAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGAT
GCTGATTCTTCTTCTCGAAAAGTGAAAGCTACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis