Browse Element(s) Details


OsAffx.29926.1.S1_s_at

Description tigr:9637.m01672
TID=OsAffx.29926.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=protein 15e1.1 homolog at4g33100. (mouse-ear cress, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1975011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19710Os.23381.1.A1_at6/119+11795029..11797947hypersensitive-induced response protein, putative, expressed
LOC_Os09g19720Os.57110.1.S1_at11/119+11798225..11799570expressed protein
LOC_Os09g19734Os.3441.1.S1_s_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.3441.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.6334.1.S1_at11/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19734Os.39720.1.A1_x_at3/119+11804588..11814324isochorismate synthases family protein, expressed
LOC_Os09g19750Os.51582.1.S2_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.56090.1.S1_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_s_at11/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750Os.51582.1.S1_at10/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19750OsAffx.29926.1.S1_at7/119+11817541..11820424Uncharacterised protein family containing protein, expressed
LOC_Os09g19760OsAffx.29927.1.S1_at11/119+11825690..11825929hypothetical protein
LOC_Os09g19769NANA9+11829099..11829284NA
LOC_Os09g19780NANA9+11836068..11836760hypothetical protein
LOC_Os09g19790Os.14152.1.S1_at11/119+11842719..11850258Peptidase family M1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29926.1.S1_s_at--427--5251Chr09:11818714..11818738 (25 bp)
GAATCTCAGGCAAATCCTATTGGAA
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--133--10871Chr09:11818695..11818719 (25 bp)
TTGGAATCAGAAACATCTGCCTACT
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--665--471Chr09:11818681..11818705 (25 bp)
ATCTGCCTACTATGCCCAGTTTGAT
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--314--6351Chr09:11818659..11818683 (25 bp)
GATGCTGATTCTTCTTCTCGAAAAG
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--597--1151Chr09:11818091..11818115 (25 bp)
AGTCTACCACTCACTCAGGGAAGCT
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--194--3751Chr09:11818082..11818106 (25 bp)
CTCACTCAGGGAAGCTTCGTAGCAA
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--133--2351Chr09:11818059..11818083 (25 bp)
AAAGCAAAGCATCAGCCTTCACCTT
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--426--10531Chr09:11818042..11818066 (25 bp)
TTCACCTTGTCCAGAGCCCAGAGAA
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--463--5871Chr09:11818029..11818053 (25 bp)
GAGCCCAGAGAAAAGGGATCCCCTT
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--394--2891Chr09:11818017..11818041 (25 bp)
AAGGGATCCCCTTCAAGCTGCTGTT
LOC_Os09g19750
OsAffx.29926.1.S1_s_at--234--1731Chr09:11817961..11817985 (25 bp)
ACCAGAAGAGCCTCTGCTTCTTCTT
LOC_Os09g19750
Target Sequence 
GAATCTCAGGCAAATCCTATTGGAATCAGAAACATCTGCCTACTATGCCCAGTTTGATGCTGATTCTTCTTCTCGAAAAG
TGAAAGCTACCAGTCTACCACTCACTCAGGGAAGCTTCGTAGCAAAGCAAAGCATCAGCCTTCACCTTGTCCAGAGCCCA
GAGAAAAGGGATCCCCTTCAAGCTGCTGTTCTTCATGGCCAAGAAAGGCAAGAACAACTCTACCAGAAGAGCCTCTGCTT
CTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29926.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis