Browse Element(s) Details


OsAffx.29929.1.S1_at

Description tigr:9637.m01680
TID=OsAffx.29929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1984011/11hypothetical protein
LOC_Os02g433105/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19800NANA9+11852027..11856936Puromycin-sensitive aminopeptidase, putative
LOC_Os09g19810Os.53813.1.S1_at1/119+11857270..11859996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g19820Os.51599.1.S1_at11/119+11861273..11865370aminopeptidase, putative, expressed
LOC_Os09g19830Os.52449.1.S1_at11/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19830Os.35502.1.A1_at10/119+11868806..11873415YDG/SRA domain containing protein, expressed
LOC_Os09g19840OsAffx.29929.1.S1_at11/119+11878033..11878467hypothetical protein
LOC_Os09g19850Os.35754.1.S1_at11/119+11879514..11884068CRS1/YhbY domain containing protein, expressed
LOC_Os09g19860OsAffx.29313.1.S1_at1/119+11885659..11888103transposon protein, putative, Mutator sub-class
LOC_Os09g19870Os.56216.1.S1_at7/119+11891671..11892888hypothetical protein
LOC_Os09g19880OsAffx.29930.1.S1_at10/119+11895013..11901545hypothetical protein
LOC_Os09g19890Os.7809.1.S1_at11/119+11903358..11907118expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29929.1.S1_at--310--9571Chr09:11878103..11878127 (25 bp)
TCTTCTTGGCAACCGGCCATGCGGG
LOC_Os09g19840
OsAffx.29929.1.S1_at--74--5151Chr09:11878111..11878135 (25 bp)
GCAACCGGCCATGCGGGAGGACTGA
LOC_Os09g19840
OsAffx.29929.1.S1_at--181--6194Chr09:11878127..11878151 (25 bp)
GAGGACTGAGGAGCGCGGCTGACGA
LOC_Os09g19840
OsAffx.29929.1.S1_at--14--10772Chr09:11878238..11878262 (25 bp)
TTGACGAGAAGCAACTCCAGCGCTC
LOC_Os09g19840
OsAffx.29929.1.S1_at--1115--5772Chr09:11878240..11878264 (25 bp)
GACGAGAAGCAACTCCAGCGCTCGC
LOC_Os09g19840
OsAffx.29929.1.S1_at--410--4072Chr09:11878281..11878305 (25 bp)
CGAGTACGCTGTCCGGCTTGAAGTT
LOC_Os09g19840
OsAffx.29929.1.S1_at--721--9953Chr09:11878285..11878309 (25 bp)
TACGCTGTCCGGCTTGAAGTTCCTC
LOC_Os09g19840
OsAffx.29929.1.S1_at--585--8713Chr09:11878290..11878314 (25 bp)
TGTCCGGCTTGAAGTTCCTCGTCGC
LOC_Os09g19840
OsAffx.29929.1.S1_at--84--4551Chr09:11878316..11878340 (25 bp)
GCCCTGAGCTCTGCGAACATGAAGA
LOC_Os09g19840
OsAffx.29929.1.S1_at--752--8911Chr09:11878320..11878344 (25 bp)
TGAGCTCTGCGAACATGAAGATTCA
LOC_Os09g19840
OsAffx.29929.1.S1_at--871--3811Chr09:11878326..11878350 (25 bp)
CTGCGAACATGAAGATTCAGAGGTT
LOC_Os09g19840
Target Sequence 
TCTTCTTGGCAACCGGCCATGCGGGAGGACTGAGGAGCGCGGCTGACGACGGGCGGGGAGAGGAGCGGAGGTGGAGACGG
ATGCGGCGGGGCGCCACCGGCGATGGCCTCGCCGTCGCCTCGCTCTCCGCTCTGCTTGACGAGAAGCAACTCCAGCGCTC
GCCCAAACCCACCCTCGCCGAGTACGCTGTCCGGCTTGAAGTTCCTCGTCGCCGCCCTGAGCTCTGCGAACATGAAGATT
CAGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis