Browse Element(s) Details


OsAffx.29949.1.S1_x_at

Description tigr:9629.m04853
TID=OsAffx.29949.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5019011/11hypothetical protein
LOC_Os09g209201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50149Os.36511.1.S1_at1/111+29150447..29150624NA
LOC_Os01g50160Os.9066.1.S1_s_at11/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50160Os.49647.1.S1_at8/111+29152592..29159502multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50170Os.50995.1.S1_at11/111+29162090..29163731Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g50180OsAffx.19542.3.S1_x_at10/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50180OsAffx.9949.1.S1_at1/111+29166251..29172064retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50190OsAffx.29949.1.S1_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50190OsAffx.29949.1.S1_x_at11/111+29173263..29173790hypothetical protein
LOC_Os01g50200Os.5862.1.S1_at10/111+29174805..29176566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g50220OsAffx.27607.1.S1_at3/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.27607.2.S1_s_at2/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.31822.1.S1_at1/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50230OsAffx.25106.1.S1_x_at10/111+29187404..29189814hypothetical protein
LOC_Os01g50240OsAffx.23734.1.S1_at11/111+29191368..29193354hypothetical protein
LOC_Os01g50259OsAffx.2289.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50259OsAffx.2290.1.S1_at11/111+29197164..29199402hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29949.1.S1_x_at--708--9333Chr07:24079024..24079048 (25 bp)
TCGCCGGCGTGAAGCAACTGCACGC
NONE
OsAffx.29949.1.S1_x_at--484--7973Chr07:24079124..24079148 (25 bp)
GGATCTGCGACTTGGGCCTCAGCAA
NONE
OsAffx.29949.1.S1_x_at--685--6413Chr07:24079125..24079149 (25 bp)
GATCTGCGACTTGGGCCTCAGCAAG
NONE
OsAffx.29949.1.S1_x_at--901--5633Chr07:24079132..24079156 (25 bp)
GACTTGGGCCTCAGCAAGTCGGCCG
NONE
OsAffx.29949.1.S1_x_at--656--10813Chr07:24079135..24079159 (25 bp)
TTGGGCCTCAGCAAGTCGGCCGCGG
NONE
OsAffx.29949.1.S1_x_at--678--10052Chr07:24079181..24079205 (25 bp)
TAGTCGGCACGCTCTGGTACATGTC
NONE
OsAffx.29949.1.S1_x_at--992--9851Chr01:29173297..29173321 (25 bp)
TACATGTCGCCAGAGTAGTACGCCA
LOC_Os01g50190
OsAffx.29949.1.S1_x_at--564--2111Chr01:29173296..29173320 (25 bp)
ACATGTCGCCAGAGTAGTACGCCAG
LOC_Os01g50190
OsAffx.29949.1.S1_x_at--443--3511Chr01:29173295..29173319 (25 bp)
CATGTCGCCAGAGTAGTACGCCAGT
LOC_Os01g50190
OsAffx.29949.1.S1_x_at--174--771Chr01:29173294..29173318 (25 bp)
ATGTCGCCAGAGTAGTACGCCAGTA
LOC_Os01g50190
OsAffx.29949.1.S1_x_at--569--8711Chr01:29173293..29173317 (25 bp)
TGTCGCCAGAGTAGTACGCCAGTAC
LOC_Os01g50190
Target Sequence 
TCGCCGGCGTGAAGCAACTGCACGCGCNGGGGCCAGGGGGTCATCCACGGCGACATCAAGCCGGGCAACGTCCTCGTCGG
CGNCGTCGATGGCNGCGTNAGGATCTGCGACTTGGGCCTCAGCAAGTCGGCCGCGGCGCCGCCGTCGCGGACGCAGCTAG
TCGGCACGCTCTGGTACATGTCGCCAGAGTAGTACGCCAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29949.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis