Browse Element(s) Details


OsAffx.29963.1.S1_at

Description tigr:9637.m01852
TID=OsAffx.29963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2150011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g21440NANA9+12964495..12964924hypothetical protein
LOC_Os09g21450OsAffx.17826.1.S1_at3/119+12968477..12970904Cyclin, N-terminal domain containing protein, expressed
LOC_Os09g21460Os.49191.1.S1_at11/119+12974277..12976292expressed protein
LOC_Os09g21470Os.54451.1.S1_at8/119+12976798..12979465expressed protein
LOC_Os09g21480OsAffx.17827.1.S1_at11/119+12982386..12982823hypothetical protein
LOC_Os09g21490OsAffx.29962.1.S1_at11/119+12985633..12987417hypothetical protein
LOC_Os09g21500OsAffx.29963.1.S1_at11/119+12988778..12989560hypothetical protein
LOC_Os09g21510OsAffx.29964.2.S1_x_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.1.S1_s_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed
LOC_Os09g21510OsAffx.29964.2.S1_at11/119+13009190..13016006Mitogen-activated protein kinase kinase kinase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29963.1.S1_at--263--10151Chr09:12988808..12988832 (25 bp)
TATCCCAAGGCACTCCTGCGCAAGA
LOC_Os09g21500
OsAffx.29963.1.S1_at--445--3211Chr09:12988813..12988837 (25 bp)
CAAGGCACTCCTGCGCAAGAAGAAG
LOC_Os09g21500
OsAffx.29963.1.S1_at--749--5451Chr09:12988867..12988891 (25 bp)
GAACTGCAAGAACTGCGGCCGGATC
LOC_Os09g21500
OsAffx.29963.1.S1_at--549--5471Chr09:12988876..12988900 (25 bp)
GAACTGCGGCCGGATCAAGATCAAG
LOC_Os09g21500
OsAffx.29963.1.S1_at--411--4711Chr09:12988881..12988905 (25 bp)
GCGGCCGGATCAAGATCAAGTCGGT
LOC_Os09g21500
OsAffx.29963.1.S1_at--286--8031Chr09:12988909..12988933 (25 bp)
GGAGGGCGACGTGCAATCGCCATCA
LOC_Os09g21500
OsAffx.29963.1.S1_at--806--4571Chr09:12988947..12988971 (25 bp)
GCGCTCCTGCGCAAAGGCTGGATCA
LOC_Os09g21500
OsAffx.29963.1.S1_at--224--3831Chr09:12988953..12988977 (25 bp)
CTGCGCAAAGGCTGGATCAAGGTCA
LOC_Os09g21500
OsAffx.29963.1.S1_at--634--2911Chr09:12988960..12988984 (25 bp)
AAGGCTGGATCAAGGTCAAGTCGGT
LOC_Os09g21500
OsAffx.29963.1.S1_at--576--6131Chr09:12988989..12989013 (25 bp)
GAGGGCGACACGCACAATGCCGCCT
LOC_Os09g21500
OsAffx.29963.1.S1_at--545--5871Chr09:12989032..12989056 (25 bp)
GAGCCGAGGCGGAAGCTCAATGAAA
LOC_Os09g21500
Target Sequence 
TATCCCAAGGCACTCCTGCGCAAGAAGAAGGCCGGTAACAAGGAGGGCGAGATGGAATGGAACTGCAAGAACTGCGGCCG
GATCAAGATCAAGTCGGTGCGGGAGGGCGACGTGCAATCGCCATCACCCGGATCCCAAGGCGCTCCTGCGCAAAGGCTGG
ATCAAGGTCAAGTCGGTGAGGGAGGGCGACACGCACAATGCCGCCTGCACCGCCAAGAAGAAGAGAGCCGAGGCGGAAGC
TCAATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis