Browse Element(s) Details


OsAffx.30013.1.S1_x_at

Description tigr:9637.m02172
TID=OsAffx.30013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g499307/11hypothetical protein
LOC_Os02g377905/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g157205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g260403/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g334103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g470702/11hypothetical protein
LOC_Os06g470901/11hypothetical protein
LOC_Os01g486501/11expressed protein
LOC_Os12g188501/11hypothetical protein
LOC_Os01g324701/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49890NANA2+30475960..30478891retrotransposon protein, putative, unclassified
LOC_Os02g49900NANA2+30479221..30485346retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49910OsAffx.32072.3.S1_at11/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.1.S1_x_at3/112+30489558..30491473hypothetical protein
LOC_Os02g49910OsAffx.32072.2.S1_at1/112+30489558..30491473hypothetical protein
LOC_Os02g49920OsAffx.12570.1.S1_at11/112+30494471..30495928very-long-chain fatty acid condensing enzyme, putative
LOC_Os02g49930OsAffx.30013.3.S1_x_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.3.S1_at11/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.1.S1_x_at7/112+30501227..30502383hypothetical protein
LOC_Os02g49930OsAffx.30013.5.S1_x_at1/112+30501227..30502383hypothetical protein
LOC_Os02g49940NANA2+30507691..30508428transposon protein, putative, unclassified
LOC_Os02g49950Os.15803.1.S1_at11/112+30512193..30516546U-box domain containing protein, expressed
LOC_Os02g49960NANA2+30518796..30519533expressed protein
LOC_Os02g49970Os.54883.1.S1_at8/112+30522776..30525251ZIM motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30013.1.S1_x_at--921--4437Chr09:15096010..15096034 (25 bp)
GCCATAGTTCTTTTGTGTTCGTTAC
NONE
OsAffx.30013.1.S1_x_at--735--7338Chr12:8975744..8975767 (24 bp)
GTGACTACTTTGACGTACGGCAAGA
LOC_Os12g15720
OsAffx.30013.1.S1_x_at--782--10174Chr12:8975788..8975812 (25 bp)
TATCACTTCTGCGTTGCTGGCTCGT
LOC_Os12g15720
OsAffx.30013.1.S1_x_at--156--10851Chr09:15096194..15096497 (25 bp)
TTGGGCATAAGTTAGGCGATGACAC
NONE
OsAffx.30013.1.S1_x_at--660--2496Chr12:8976243..8976267 (25 bp)
AACATGTTCTTCAGGGAGTCAGGCA
LOC_Os12g15720
OsAffx.30013.1.S1_x_at--866--6095Chr09:15096569..15096593 (25 bp)
GAGTCAGGCATGTACCAGGGCTAAA
NONE
OsAffx.30013.1.S1_x_at--783--472Chr12:8976288..8976312 (25 bp)
ATCTGATTTCGCTTGAAACCTTGCA
LOC_Os12g15720
OsAffx.30013.1.S1_x_at--773--2211Chr09:15096683..15096707 (25 bp)
ACAAGACGACTGTGATGACGGGAGA
NONE
OsAffx.30013.1.S1_x_at--333--7736Chr12:8976400..8976423 (24 bp)
GGTGGAGTCGCATCTTTACAAGCTA
LOC_Os12g15720
OsAffx.30013.1.S1_x_at--767--50912Chr12:18572822..18572846 (25 bp)
GCACTGTTGCAGGTGGAGTCCAAGA
NONE
OsAffx.30013.1.S1_x_at--119--991Chr09:15096781..15096805 (25 bp)
AGGATAGCAATTGTTTTCGGTGGCG
NONE
Target Sequence 
GCCATAGTTCTTTTGTGTTCGTTACCTGAATCGTATGAGCATGTGGTGACTACTTTGACGTACGGCAAGAAGACCATCAA
AACTAAAGATATCACTTCTGCGTTGCTGGCTCGTGATCAGATGAGAAAGAACAAAGAGGGTGAAACATCTCAAGCGGAGG
GTTTGCTAGTAAAAGAAGATCATGTTGGGCATAAGTTAGGCGATGACACAAGTTATCCGGCCGTGGGAGTACGTGAAGTC
AATATCAAGCTAGAAGATGGAGGTGAACATGTTCTTCAGGGAGTCAGGCATGTACCAGGGCTAAAGAGGAATCTGATTTC
GCTTGAAACCTTGCATGAAGAAGGGTTAATATTCCGCGGTAATCGGAATAGGAAGACCATGGAGATCATGAAGGACAAGA
CGACTGTGATGACGGGAGAGAAGGTGGAGTCGCATCTTTACAAGCTACGAGGGTGCACTGTTGCAGGTGGAGTCCAAGAG
GGAGCGGTTGCTAGGATAGCAATTGTTTTCGGTGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30013.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis